Skip to main content
. 2013 Mar 5;1:e47. doi: 10.7717/peerj.47

Table 4. 16S diversity.

Bacterial 16S rRNA amplicon diversity analysis of two arid soil sites in Cuatro Cienegas, Coahuila, Mexico.

OTUs a Singlets a Doublets a Chao1 CI b Shannon CI b Simpson CI b Ace CI b % coverage c
Dry lagoon
Before sterilization 6586 4917 882 43226 (39437–47450) 7.31 (7.27–7.34) 0.007 (0.006–0.007) 99811 (96592–103144) 0.63
3 months 4106 2760 587 20166 (18253–22337) 6.07 (6.03–6.11) 0.020 (0.019–0.021) 47720 (45885–49636) 0.78
6 months 7518 5830 1093 42815 (39583–46372) 7.59 (7.56–7.63) 0.004 (0.004–0.004) 106755 (103366–110262) 0.61
9 months 3552 2433 451 10097 (9334–10961) 7.17 (7.15–7.21) 0.002 (0.002–0.003) 18720 (17980–19497) 0.77
12 months 6882 5114 808 60661 (54582–67515) 7.70 (7.66–7.73) 0.004 (0.004–0.005) 137126 (133112–141267) 0.58
Undisturbed soil 8258 7157 1135 53773 (49545–58434) 8.16 (8.13–8.19) 0.001 (0.001–0.001) 130419 (126816–134131) 0.57
River
Before sterilization 8268 6797 1085 53676 (49534–58233) 7.80 (7.76–7.83) 0.005 (0.004–0.005) 140680 (136580–144910) 0.56
3 months 3785 2878 657 17395 (15706–19323) 6.04 (6.00–6.08) 0.013 (0.013–0.014) 32413 (31077–33815) 0.81
6 months 9001 7289 1148 61455 (56784–66583) 8.24 (8.21–8.26) 0.001 (0.001–0.002) 161368 (156754–166125) 0.52
9 months 6530 6607 1202 33236 (30685–36056) 7.35 (7.32–7.38) 0.003 (0.003–0.003) 94400 (91445–97457) 0.69
12 months 6356 4728 734 27928 (25926–30135) 7.80 (7.75–7.82) 0.002 (0.002–0.002) 67224 (65075–69452) 0.62
Undisturbed soil 8461 7019 1171 52934 (48931–57332) 8.23 (8.20–8.25) 0.001 (0.001–0.001) 125851 (122223–129596) 0.54

Notes.

All samples were normalized to 10,441 sequences (Table S3) for diversity comparison, values in parentheses represent the lower and upper 95% confidence interval associated with the Chao1 nonparametric estimator.

a

Values calculated based on 97% threshold.

b

Lower and upper 95% confident intervals associated with the diversity parameter.

c

Good’s coverage estimator.