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. 2013 Apr 17;8(4):e61250. doi: 10.1371/journal.pone.0061250

Table 4. Joint effect and interaction between polymorphisms and H. pylori infection on risk of intestinal metaplasia and dysplasia*.

Variant Genotype H. pylori infection OR (95% CI) P for trend
rs2910164 GG Negative 1.00 (referent)
GC Negative 1.01 (0.68–1.50)
CC Negative 1.08 (0.48–2.41)
GG Positive 2.44 (1.80–3.31)
GC Positive 2.55 (1.86–3.49)
CC Positive 2.25 (1.43–3.54) <0.001
P for interaction§ 0.35
rs895819 TT Negative 1.00 (referent)
TC Negative 0.87 (0.51–1.48)
CC Negative 0.93 (0.52–1.66)
TT Positive 1.83 (1.09–3.10)
TC Positive 2.09 (1.28–3.39)
CC Positive 2.77 (1.68–4.56) <0.001
P for interaction§ 0.92
*

This analysis was restricted to 2078 participants who had diagnosis for H. pylori infection.

Odds ratios (ORs) and 95% confidence intervals (CI) for the risk of intestinal metaplasia and dysplasia were estimated in reference to superficial gastritis/chronic atrophic gastritis, and adjusted for age, gender, smoking and drinking status. Participants with missing data on any of variables were excluded from the analysis.

P for trend was calculated by assigning an ordinal value (1–6) to each combination of genotype and H. pylori infection (1 = homozygote wild without H. pylori infection, 2 = heterozygote without H. pylori infection, 3 = homozygote variant without H. pylori infection, 4 = homozygote wild with H. pylori infection, 5 = heterozygote with H. pylori infection, 6 = homozygote variant with H. pylori infection) and adding it as a continuous variable to the multivariate model.

§

Likelihood ratio test was used to calculate the P value for interaction by comparing the two models with and without the product term of genotypes and H. pylori infection.