Table 2. Overview of data sets used in this article.
Application | No. | Description | # samples | Ref. |
Lung cancer | 1 | MSAS (Michigan) | 162 | [40] |
2 | MSAS (HLM) | 69 | [40] | |
3 | MSAS (DFCI) | 73 | [40] | |
4 | MSAS (MSKCC) | 89 | [40] | |
5 | Bild et al | 51 | [41] | |
6 | Tomida et al | 91 | [42] | |
7 | Takeuchi et al | 81 | [43] | |
8 | Roepman et al | 49 | [44] | |
Aging | 1 | WB Type 1 Diabetes | 190 | [49] |
2 | WB ovarian cancer controls | 261 | [50] | |
3 | WB healthy PMP females | 87 | [51] | |
4 | Brain frontal cortex | 132 | [52] | |
5 | Brain temporal cortex | 126 | [52] | |
6 | Brain pons areas | 123 | [52] | |
7 | Brain cerebellum | 111 | [52] | |
Mouse liver | 1 | CAST×B6 females | 141 | [27] |
2 | CAST×B6 males | 100 | [27] | |
3 | B6×C3H ApoE females | 134 | [24] | |
4 | B6×C3H ApoE males | 124 | [24] | |
5 | B6×C3H wild type females | 66 | [55] | |
6 | B6×C3H wild type males | 69 | [55] | |
7 | C3H×B6 wild type females | 63 | [55] | |
8 | C3H×B6 wild type males | 66 | [55] | |
9 | Mouse Diversity Panel | 196 | [56] |
Column # samples lists the number of samples (after our removal of potential outliers) in each data set. MSAS, Multi-Site Adenocarcinoma Study; HLM, Moffit Cancer Center; DFCI, Dana-Farber Cancer Institute; MSKCC, Memorial Sloan-Kettering Cancer Center; WB, whole blood; PMP, postmenopausal.