Table 3.
ESC lineage | Differentiated cells | ESC-associated transcripts differentially expressed | Reference |
---|---|---|---|
HES3, HES4 | Cells from fetal brain, fetal liver, adult brain, placenta, adult testis, adult kidney, adult lung, adult heart | CCNB1, CFL1, CGI-48, CHK2, CKS1B, CLDN6, Cx43, DNMT3B, ERH, FAM60A, FAS, FLJ10713, FZD7, GDF3, GTCM1, HMGA1, LIN-28, NCL, Numatrin, PCNA, PNF1, POU5F1, REX-1, SFRP1, SOX-2, TDGF-1, TERF-1, TMSB15A. | [25] |
BG02 | Embryoid body | ARL8, BRIX, C15orf15, C20orf1, C20orf129, C20orf168, CCNB1, CCNC, CCT8, CDC2, CER1, CRABP1, CRABP2, CYP26A1, DDX21, DNMT3B, EIF4A1, ELOVL6, EPRS, FABP5, GAL, GDF3, GJA1, GSH1, GTCM-1, HDAC2, HMGB2, HMGIY, HNRPA1, HNRPAB, HSSG1, IDH1, IFITM1, IMP-2, IMPDH2, Jade-1, KIAA1573, KIF4A, KPNA2, Laminin receptor, LAPTM4B, LDHB, LEFTB, Lin-28, LRRN1, MAD2L2, MGST1, MTHFD1, MTHFD2, Nanog, NASP, NBR2, NME2, NPM1, NS, Numatrin, POU5F1, PPAT, PSMA2, PSMA3, PTTG1, RAMP, RPL24, RPL4, RPL6, RPL7, SEMA6A, SET, SFRP2, SLC16A1, SMS, SNRPF, SOX2, SSB, STK12, TD-60, TDGF1, TK1. | [26] |
GE01/GE07/GE09 (pooled RNA) | Embryoid body | C20orf129, CCNB1, CCNC, CRABP1, CYP26A1, ELOVL6, FABP5, FLJ12581/Nanog, HDAC2, HSPA4, JADE-1, KIAA1573, KPNA2, LEFTB, MGC27165, GST1, NASP, NS, PSMA3, PTTG1, RAMP, RPL17, SEMA6A, SFRP2, SLC16A1, TDGF1, TNNT1, ZNF257. | [80] |
H1 | Embryoid bodies | AK3, DUSP6, E2IG5, FLJ10713, FRAT2, GAL, LEFT B, MYO10, PLP1, POU5F1, PROML1, PSIP2, SPS, STRIN, VRK1, VSNL1. | [81] |
CH3, CH4 | Embryoid bodies | A2ML1, AASS, ADCY2, ADD2, AK5, ARTN, C14orf115, C1orf182, C9orf61, CABYR, CACNA1G, CAMKV, CDCA7L, CHST4, CKMT1, CNTN1, CRABP1, CTGF, CXCL6, DCAMKL1, DDX25, DEPDC2, DNMT3B, DPPA2, DPPA4, FBXL16, FGF2, FLJ12505, FLJ12684, FLJ30707, GABRA5, GABRB3, GAP43, GPC4, GPR19, GPR23, GRPR, HESX1, INA, INDO, INHBE, ITGB1BP3, LEFTY1, LOC168474, LOC283174, MDN1, NALP4, NANOG, NAP1L2, NEF3, NEFL, NELL2, NMNAT2, NMU, NPTX2, OLFM1, OSBPL6, PCSK9, POU5F1, PTHB1, PTPRB, PTPRZ1, RAB39B, RARRES2, RASL11B, RDH12, RET, RNF182,SAMHD, SCG3, SCGB3A2, SEPHS1, SLC10A4, SLC7A3, SOX2, SYT1, TAC1, TAF4B, TDGF1,TERF1, TIMP4 TNFRSF8, USP44, WIF1, ZIC3. | [82] |
H1, H7, H9 | Embryoid bodies, immature hepatocytes and putative neural cells | FLJ35207, FOXH1, FOXO1A, GABRB3, GAP43, GRPR, PHC1, PODXL1, POU5F1, PRDM14, PTPRZ1, SALL1, SALL2, SZF1, THY1, ZIC2, ZIC3, ZNF206. | [21] |
BG01, BG02, BG03 | Embryoid bodies | CKMT1, DIAPH2, DNMT3B, EBAF, GABRB3, GDF3, GYLTL1B, IFITM1, LCK, LIN28, MIBP, NTS, PMAIP1, POU5F1, TDGF1, UTF1, ZNF206, ZPF42. | [83] |
FOXO1, forkhead box O1.