Table 3.

Genes Expressed at Higher Levels in Embryonic Stem Cells When Compared to Differentiated Cells Based in Transcriptomic Data

ESC lineage	Differentiated cells	ESC-associated transcripts differentially expressed	Reference
HES3, HES4	Cells from fetal brain, fetal liver, adult brain, placenta, adult testis, adult kidney, adult lung, adult heart	CCNB1, CFL1, CGI-48, CHK2, CKS1B, CLDN6, Cx43, DNMT3B, ERH, FAM60A, FAS, FLJ10713, FZD7, GDF3, GTCM1, HMGA1, LIN-28, NCL, Numatrin, PCNA, PNF1, POU5F1, REX-1, SFRP1, SOX-2, TDGF-1, TERF-1, TMSB15A.	[25]
BG02	Embryoid body	ARL8, BRIX, C15orf15, C20orf1, C20orf129, C20orf168, CCNB1, CCNC, CCT8, CDC2, CER1, CRABP1, CRABP2, CYP26A1, DDX21, DNMT3B, EIF4A1, ELOVL6, EPRS, FABP5, GAL, GDF3, GJA1, GSH1, GTCM-1, HDAC2, HMGB2, HMGIY, HNRPA1, HNRPAB, HSSG1, IDH1, IFITM1, IMP-2, IMPDH2, Jade-1, KIAA1573, KIF4A, KPNA2, Laminin receptor, LAPTM4B, LDHB, LEFTB, Lin-28, LRRN1, MAD2L2, MGST1, MTHFD1, MTHFD2, Nanog, NASP, NBR2, NME2, NPM1, NS, Numatrin, POU5F1, PPAT, PSMA2, PSMA3, PTTG1, RAMP, RPL24, RPL4, RPL6, RPL7, SEMA6A, SET, SFRP2, SLC16A1, SMS, SNRPF, SOX2, SSB, STK12, TD-60, TDGF1, TK1.	[26]
GE01/GE07/GE09 (pooled RNA)	Embryoid body	C20orf129, CCNB1, CCNC, CRABP1, CYP26A1, ELOVL6, FABP5, FLJ12581/Nanog, HDAC2, HSPA4, JADE-1, KIAA1573, KPNA2, LEFTB, MGC27165, GST1, NASP, NS, PSMA3, PTTG1, RAMP, RPL17, SEMA6A, SFRP2, SLC16A1, TDGF1, TNNT1, ZNF257.	[80]
H1	Embryoid bodies	AK3, DUSP6, E2IG5, FLJ10713, FRAT2, GAL, LEFT B, MYO10, PLP1, POU5F1, PROML1, PSIP2, SPS, STRIN, VRK1, VSNL1.	[81]
CH3, CH4	Embryoid bodies	A2ML1, AASS, ADCY2, ADD2, AK5, ARTN, C14orf115, C1orf182, C9orf61, CABYR, CACNA1G, CAMKV, CDCA7L, CHST4, CKMT1, CNTN1, CRABP1, CTGF, CXCL6, DCAMKL1, DDX25, DEPDC2, DNMT3B, DPPA2, DPPA4, FBXL16, FGF2, FLJ12505, FLJ12684, FLJ30707, GABRA5, GABRB3, GAP43, GPC4, GPR19, GPR23, GRPR, HESX1, INA, INDO, INHBE, ITGB1BP3, LEFTY1, LOC168474, LOC283174, MDN1, NALP4, NANOG, NAP1L2, NEF3, NEFL, NELL2, NMNAT2, NMU, NPTX2, OLFM1, OSBPL6, PCSK9, POU5F1, PTHB1, PTPRB, PTPRZ1, RAB39B, RARRES2, RASL11B, RDH12, RET, RNF182,SAMHD, SCG3, SCGB3A2, SEPHS1, SLC10A4, SLC7A3, SOX2, SYT1, TAC1, TAF4B, TDGF1,TERF1, TIMP4 TNFRSF8, USP44, WIF1, ZIC3.	[82]
H1, H7, H9	Embryoid bodies, immature hepatocytes and putative neural cells	FLJ35207, FOXH1, FOXO1A, GABRB3, GAP43, GRPR, PHC1, PODXL1, POU5F1, PRDM14, PTPRZ1, SALL1, SALL2, SZF1, THY1, ZIC2, ZIC3, ZNF206.	[21]
BG01, BG02, BG03	Embryoid bodies	CKMT1, DIAPH2, DNMT3B, EBAF, GABRB3, GDF3, GYLTL1B, IFITM1, LCK, LIN28, MIBP, NTS, PMAIP1, POU5F1, TDGF1, UTF1, ZNF206, ZPF42.	[83]

FOXO1, forkhead box O1.