Table 2.
List of Single Nucleotide Variations and Insertion–Deletion in the Adult Wildtype Zebrafish (ASWT) Genome
| List of variations | Number of variations |
|---|---|
| Total number of single nucleotide variants (SNVs) | 5,289,829 |
| Homozygous SNVsa | 1,179,274 |
| Heterozygous SNVsb | 4,110,555 |
| SNVs mapping to dbSNP (v130)c | 96,600 |
| SNVs mapping to Sanger single nucleotide polymorphism (SNP) datasetd | 43,775 |
| Novel SNVse | 5,149,454 |
| SNVs mapping within genesf | 3,514,884 |
| SNVs mapping to intergenic regionsg | 1,774,945 |
| Total number of insertion–deletions (indels) | 1,658,655 |
| Total number of insertions | 765,131 |
| Total number of deletions | 893,524 |
| Indels within genesh | 438,748 |
| Indels in the intergenic regioni | 1,219,907 |
a
Where both the alleles differ from the reference.
b
Where only one allele differs from the reference.
c
SNVs identical to dbSNP dataset v130 for zebrafish.
d
SNVs overlapping with Sanger SNV dataset for Zebrafish (variants called by Stemple Lab, SATMap project, and available at Ensembl database).
e
Novel SNVs identified from the ASWT zebrafish genome.
f
SNVs present in protein-coding genes available at Ensemble and RefSeq databases as predicted by variant effect predictor tool.
g
Variations present between protein-coding genes as predicted by variant effect predictor tool.
h
Indels present within the RefSeq genes.
i
Indels present between RefSeq genes.