Table 5. SNPs with genome-wide and suggestive significance for carcass weight, eviscerated weight and dressed percentage traits.

Trait1	SNP2	Chr.	Position (bp)	Nearest Gene3	Distance (kb)	P_value	P_value_Bonferroni
CW	GGaluGA051980	1	161061660	DACH1	within	4.86E−05	0.937
	bGga_rs13964189	1	161126313	DACH1	within	6.34E−06	0.122
	abGga_rs15619099	4	78475066	LCORL	236	2.28E−06	0.044
	aGGaluGA265949	4	78476680	LCORL	234	2.06E−06	0.040
	Gga_rs14707179	4	78899898	LAP3	19	3.98E−05	0.768
	abGga_rs16436561	4	78993342	QDPR; LDB2	103;108	4.85E−07	9.36E−03
	bGga_rs15619411	4	79191496	LDB2	within	2.11E−05	0.407
	Gga_rs14491543	4	79484730	TAPT1	65	3.10E−05	0.598
	bGga_rs14491627	4	79531679	TAPT1	112	4.79E−05	0.924
	bGga_rs14627660	7	33957148	ARHGAP15	373	1.27E−05	0.246
EW	Gga_rs13964189	1	161126313	DACH1	within	1.18E−05	0.228
	Gga_rs15619099	4	78475066	LCORL	236	9.92E−06	0.191
	GGaluGA265949	4	78476680	LCORL	237	9.65E−06	0.186
	bGga_rs14707179	4	78899898	LAP3	19	3.81E−05	0.735
	bGga_rs16436561	4	78993342	QDPR; LDB2	103;108	1.21E−06	0.023
	bGga_rs15619411	4	79191496	LDB2	within	8.74E−06	0.169
	bGga_rs14491543	4	79484730	TAPT1	65	4.51E−05	0.870
	bGga_rs14611966	7	19419046	DYNC1I2	6	1.47E−05	0.284
	Gga_rs15043317	19	211349	CDD	27	4.16E−05	0.802
DP	Gga_rs14487406	4	70644714	UCHL1	92	2.92E−05	0.563
	Gga_rs15613971	4	70769617	CHRNA9	102	1.56E−05	0.300
	Gga_rs14104932	17	919605	FBXW5	8	2.08E−05	0.400

Note: ¹CW, carcass weight; EW, eviscerated weight; DP, dressed percentage;

²SNPs with superscript “a” were of genome-wide significance by compressed MLM, those with superscript “b” were significant by GLM, and those with superscript “ab” were significant by both methods; these SNPs are shown underlined in boldface;

³The nearest known gene to the genome-wide significant SNPs are shown underlined in boldface.