Table 1. Comparison of 454 transcriptome assembly against reference protein databases.
Arabidopsis (TAIR10) | Ambrosia Allergens | NCBI Plant Allergens | NCBI non. red. | Total (non. red.) | |
Reference proteins | 35,386 | 47 | 7,384 | 399,458 | – |
Matched reference proteins (any hit) | 7,831 | 30 | 587 | 22,949 | |
Matched reference proteins (fbh) | 1,008 | 12 | 62 | 1,260 | – |
Mapped Ambrosia transcript representatives | 1,415 | 21 | 133 | 1,532 | 1,542 |