Table 2. .
SNP |
Gene Location |
Chromosomal Position |
MA |
Discovery |
Replication, Case–Control |
Replication, Family |
Meta-Analysis |
|||||||||||
F_A |
F_U |
OR |
P |
F_A |
F_U |
OR |
P |
F_A |
F_U |
OR |
P |
OR |
P |
P_A† |
||||
rs3118516 | 5′ to COL5A1 | 136,579,612 | A | 0.39 | 0.28 | 1.37 | 0.01 | 0.42 | 0.36 | 1.29 | 0.02 | 0.36 | 0.31 | 1.26 | 0.23 | 1.31 | 3.6E-4 | 0.02 |
rs1536482 | 5′ to COL5A1 | 136,580,348 | A | 0.41 | 0.33 | 1.32 | 6.5E-3 | 0.42 | 0.36 | 1.28 | 0.02 | 0.37 | 0.31 | 1.27 | 0.20 | 1.30 | 1.5E-4 | 6.5E-3 |
rs3118520 | 5′ to COL5A1 | 136,581,415 | G | 0.47 | 0.37 | 1.31 | 0.03 | 0.48 | 0.41 | 1.31 | 0.009 | 0.44 | 0.37 | 1.33 | 0.11 | 1.31 | 2.0E-4 | 8.6E-3 |
rs7044529 | COL5A1 | 136,707,872 | T | 0.17 | 0.14 | 1.44 | 7.4E-3 | 0.16 | 0.15 | 1.02 | 0.92 | 0.22 | 0.12 | 1.96 | 0.03 | 1.39 | 2.9E-3 | 0.12 |
P value < 0.05 in replication case–control and family cohorts and by meta-analysis.
Bonferroni-corrected P values.