Table 2. Intermolecular nonbonded energies for HD5 dimers with adenovirus vertex proteins.
Nonbonded energy between HD5 and fiber (kcal/mol)a | Nonbonded energy between HD5 and penton base (kcal/mol)a | |
Ad5.F35 (defensin-sensitive) | −274 | −308 |
Ad5.PB/GYAR (defensin-resistant) | −90 | −85 |
Average over 24 HD5 dimer positions after MDFF simulations.