Table 2.

θ_H (on the diagonal for SSRs), Pairwise F_ST comparisons and effective migration rates between groups based on SSR and SNP data

	Section A	Section D	Connemara	Carneddau	Highland
SSRs
Section A	2.013	3.27	4.42	5.44	3.55
Section D	0.0711	1.891	2.76	2.81	1.89
Connemara	0.0535	0.0831	2.150	2.68	3.26
Carneddau	0.0439	0.0817	0.0852	2.055	2.47
Highland	0.0658	0.1166	0.0711	0.0920	1.996
SNPs
Section A	*	2.44	2.87	4.59	2.35
Section D	0.0931	*	2.69	2.47	2.18
Connemara	0.0802	0.0851	*	3.01	2.60
Carneddau	0.0517	0.0919	0.0766	*	2.47
Highland	0.0960	0.1030	0.0877	0.0918	*

Below diagonal: Pairwise F_ST based on number of different alleles. Above diagonal: effective number of migrants (Nm) per generation, based on Slatkin 1995. Theta H estimates 4N_eμ = (1/(1−H_e)²)−1. All F_ST values significant at P < 0.01.