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. 2013 Apr 22;14(Suppl 7):S10. doi: 10.1186/1471-2105-14-S7-S10

Table 2.

Splicing variants.

Novel AS Events Carraro et al. Carraro et al. (*) NGS-Trex (N > 1) NGS-Trex (N > 2)
Total 2865 1757 (**) 1641 683

Canonical na na 1245 539

RT-PCR validation 18 36 36

qRT-PCR 8 16 16

As described more in detail in the text, NGS-Trex treats splicing events from the "intron point of view" while in Carraro work splicing are classified from the exon perspective. This implies that one cassette-exon event is identified by NGS-Trex as two splicing sites. To compare data we corrected data to take into account this difference. Column marked with (*) shows the corrected values. (**) 1757 events derive from 530 AS donor/acceptor site usage + 487 exon skipping + 562 exon inclusion + 89×2 exon inclusion (each exon inclusion needs 2 introns). See also Figure 4 in Carraro paper for details.