Table 2.
α | level 1 | max level | best level | time (s) | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
#cc | pMF | pBP | μq | lev | #cc | pMF | pBP | μq | lev | #cc | pMF | pBP | μq | |||||
HOCCLUS2 | ||||||||||||||||||
0.1 | 10/37 | 75 | 1.000 | 1.000 | 1.00 | 6 | 5 | 0.281 | 0.289 | 0.13 | 2 | 38 | 0.000 | 0.000 | 0.72 | 10 | ||
0.2 | 5 | 10 | 0.064 | 0.060 | 0.24 | 2 | 38 | 0.000 | 0.000 | 0.72 | 9 | |||||||
0.3 | 4 | 18 | 0.000 | 0.000 | 0.40 | 2 | 38 | 0.000 | 0.000 | 0.72 | 9 | |||||||
0.4 | 4 | 23 | 0.000 | 0.000 | 0.49 | 2 | 38 | 0.000 | 0.000 | 0.72 | 10 | |||||||
0.5 | 3 | 33 | 0.000 | 0.000 | 0.66 | 2 | 38 | 0.000 | 0.000 | 0.72 | 9 | |||||||
HOCCLUS (with METIS) | ||||||||||||||||||
0.1 | 100/100 | 75 | 0.000 | 0.003 | 0.19 | 3 | 51 | 0.013 | 0.031 | 0.09 | 1 | 75 | 0.000 | 0.003 | 0.19 | 51 | ||
0.2 | 2 | 73 | 0.000 | 0.007 | 0.14 | 1 | 75 | 0.000 | 0.003 | 0.19 | 82 | |||||||
0.3 | 1 | 75 | 0.000 | 0.003 | 0.19 | 1 | 75 | 0.000 | 0.003 | 0.19 | 94 | |||||||
0.4 | 1 | 75 | 0.000 | 0.003 | 0.19 | 1 | 75 | 0.000 | 0.003 | 0.19 | 94 | |||||||
0.5 | 1 | 75 | 0.000 | 0.003 | 0.19 | 1 | 75 | 0.000 | 0.003 | 0.19 | 92 | |||||||
ROCC | ||||||||||||||||||
- | 35/17 | 198 | 0.231 | 1.000 | 0.01 | - | - | - | - | - | - | - | - | - | - | 149 |
miRTarBase results. represents the percentage of biclustered mRNAs and miRNAs. #cc is the number of biclusters. lev represents the level number. Results do not vary at the first level since it does not depend on the α value. β does not influence results because of binary interaction scores.