Table 6.
mirDIPfilt results
| α | β | level 1 | max level | best level | time (s) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| #cc | pMF | pBP | μq | lev | #cc | pMF | pBP | μq | lev | #cc | pMF | pBP | μq | ||||
| HOCCLUS2 | |||||||||||||||||
| 0.1 | 0.3 | 46/86 | 528 | 0.000 | 0.000 | 0.49 | 8 | 40 | 0.027 | 0.127 | 0.12 | 1 | 528 | 0.000 | 0.000 | 0.49 | 2031 |
| 0.2 | 6 | 135 | 0.001 | 0.000 | 0.25 | 1 | 528 | 0.000 | 0.000 | 0.49 | 2225 | ||||||
| 0.3 | 5 | 269 | 0.000 | 0.000 | 0.36 | 1 | 528 | 0.000 | 0.000 | 0.49 | 2824 | ||||||
| 0.1 | 0.4 | 40/85 | 500 | 0.000 | 0.000 | 0.52 | 7 | 35 | 0.056 | 0.045 | 0.12 | 1 | 500 | 0.000 | 0.000 | 0.52 | 1627 |
| 0.2 | 6 | 121 | 0.000 | 0.000 | 0.25 | 1 | 500 | 0.000 | 0.000 | 0.52 | 1870 | ||||||
| 0.3 | 5 | 225 | 0.000 | 0.000 | 0.35 | 1 | 500 | 0.000 | 0.000 | 0.52 | 2213 | ||||||
| 0.1 | 0.5 | 29/79 | 503 | 1.000 | 1.000 | 0.58 | 8 | 30 | 0.061 | 0.215 | 0.12 | 8 | 30 | 0.061 | 0.215 | 0.12 | 1495 |
| 0.2 | 6 | 92 | 0.485 | 1.000 | 0.24 | 2 | 252 | 0.188 | 0.110 | 0.49 | 1582 | ||||||
| 0.3 | 6 | 178 | 0.095 | 0.215 | 0.36 | 4 | 184 | 0.046 | 0.165 | 0.38 | 1948 | ||||||
| METIS | |||||||||||||||||
| - | - | 100/100 | 528 | 1.000 | 1.000 | 0.34 | - | - | - | - | - | - | - | - | - | - | 26 |
| - | - | 500 | 1.000 | 1.000 | 0.30 | - | - | - | - | - | - | - | - | - | - | 27 | |
| - | - | 503 | 1.000 | 1.000 | 0.31 | - | - | - | - | - | - | - | - | - | - | 24 | |
| ROCC | |||||||||||||||||
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
mirDIPfilt results. represents the percentage of biclustered mRNAs and miRNAs. #cc is the number of biclusters. lev represents the level number. ROCC results are not reported for filtered datasets since it raised an error during the execution and the biclustering process could not terminate.