Table 1.

Genomic locations in megabases of the loci used in this study.

Gene	Chromosome	Chromosome locationa	Reference
LUM*	4	70.32	Carneiro et al. (2009)
PROC*	7	59.22	Geraldes et al. (2008)
XPO4	8	43.82	This study
ATP12A*	8	45.29	Carneiro et al. (2009)
MGST3*	13	27.25	Carneiro et al. (2009)
STAG1	14	30.26	Carneiro et al. (2009)
GK5*	14	35.61	Carneiro et al. (2010)
EDNRA	15	17.12	Geraldes et al. (2008)
SHOX	X	Unknown	Carneiro et al. (2010)
GLRA2	X	0.61	Carneiro et al. (2010)
PHKA2*	X	4.72	Geraldes et al. (2006)
MAOA*	X	29.15	Carneiro et al. (2010)
DGKK	X	Unknown	Carneiro et al. (2010)
SMCX	X	34.72	Geraldes et al. (2006)
ARHGEF9*	X	42.30	Carneiro et al. (2010)
MSN	X	44.32	Geraldes et al. (2006)
OGT*	X	50.03	Carneiro et al. (2010)
NRK	X	54.60	Carneiro et al. (2010)
AMOT	X	61.38	Carneiro et al. (2010)
KLHL13	X	66.54	Carneiro et al. (2010)
TNMD*	X	88.78	Carneiro et al. (2010)
DIAPH2	X	92.70	Carneiro et al. (2010)
HPRT1*	X	108.78	Geraldes et al. (2006)
F9	X	Unknown	Carneiro et al. (2010)
FMR1	X	Unknown	Carneiro et al. (2010)
G6PD	X	Unknown	Carneiro et al. (2010)
SRY	Y	Unknown	Geraldes et al. (2005)
cytb	mtDNA	Unknown	Branco et al. (2000)

^*Loci excluded from cline analysis either because the genotyping assay failed, levels of missing data were high or we could not attribute subspecific origin of alleles (see Results section).

^aChromosome and chromosome location in megabases were obtained at the Broad Institute website from the European rabbit 7X genome sequence assembly or from the rabbit physical map (Chantry-Darmon et al. 2005).