Table 1.

Haplotype phasing and genotype imputation performance ignoring reference haplotypes

Program	Phasing accuracy	Hetero. accuracy	norm of errors	Total runtime	Max memory footprint
Mendel-GPU	0.945	0.929	188 239.305	19:44	320 MB
BEAGLE	0.968	0.948	159 772.295	2:03:37	573 MB
IMPUTE2	0.925	0.820	695 491.159	10:51:33	2.5 GB
thunder	0.964	0.952	244 652.465	25:00:50	947 MB