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Genotype imputation in a low pass (2–4×) re-sequencing study using KGP reference haplotypes
| Program | Hetero. accuracy |
 norm of errors |
Total runtime | Max memory footprint |
|---|---|---|---|---|
| Mendel-GPU | 0.943 | 767 007.878 | 15:11 | 575 MB |
| BEAGLE | 0.962 | 522 638.033 | 26:21:45 | 7.0 GB |
| IMPUTE2 | 0.903 | 1 604 154.945 | 36:21:12 | 3.7 GB |
