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Alignment of small RNA reads to the HIV-1 genome. RNA reads of 19 to 25 nt in length that mapped to the HIV-1 genome were aligned based on their 5′ ends and are shown relative to their genomic position of origin (x axis). The y axis shows the number of reads as a percentage of the total number of cellular miRNA reads in the same RNA sample. (A) TZM-bl infected with WT/BaL; (B) C8166 infected with NL4-3; (C) CD4+ PBMCs infected with BaL; (D) MDMs infected with NLHXADA.
