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. 2013 Jan 10;7(5):962–979. doi: 10.1038/ismej.2012.161

Table 5. OTUs enriched in specific treatments, the nearest related isolate genome and number of VFs.

Treatment Enriched OTU Phylum/class Best genomic match % ID # VFs
Amansia OTU854 Flavobacteria Fluviicola taffensis DSM 16823 88 541
Amn/Hala OTU14 α-Proteobacteria Ruegeria spp. TM1040 91 672
Halimeda OTU162 Flavobacteria Fluviicola taffensis DSM 16823 84 541
Porites OTU173 α-Proteobacteria No genome >80% identity NA NA
Porites OTU136 γ-Proteobacteria Cellvibrio japonicus Ueda107 91 750
Porites OTU50 α-Proteobacteria Hyphomonas neptunium 92 559
Porites OTU642 γ-Proteobacteria Congregibacter litoralis KT71 92 652
Porites OTU115 α-Proteobacteria Micavibrio aeruginosavorus 85 390
Porites OTU197 α-Proteobacteria Erythrobacter litoralis 99 430
Turbinaria OTU6 γ-Proteobacteria Pseudoalteromonas spp. SM9913 91 727
Turbinaria OTU27 γ-Proteobacteria Pseudoalteromonas spp. SM9913 92 727
Turbinaria OTU39 γ-Proteobacteria Alteromonas spp. SN2 93 789
Turbinaria OTU18 γ-Proteobacteria Alteromonas macleodii 93 759
Turbinaria OTU59 γ-Proteobacteria Vibrio splendidus LGP32 93 875
Turbinaria OTU102 γ-Proteobacteria Vibrio splendidus LGP32 93 875
Turbinaria OTU174 α-Proteobacteria Ruegeria pomeroyi DSS-3 87 690
Turbinaria OTU100 α-Proteobacteria Ruegeria spp. TM1040 93 672
Turbinaria OTU17 γ-Proteobacteria Pseudoalteromonas spp. SM9913 95 727
Ambient OTU43 α-Proteobacteria Pelagibacter ubique HTCC1062 89 240
Ambient OTU9 α-Proteobacteria Pelagibacter ubique HTCC1062 97 240
Ambient OTU38 Flavobacteria Fluviicola taffensis DSM 16823 87 541
Ambient OTU22 Cyanobacteria Synechococcus spp. CC9605 96 289
Ambient OTU15 α-Proteobacteria No genome >80% identity NA NA

Abbreviations: ID, identity; NA, not applicable; OTU, operational taxonomic unit; VF, virulence factor.

a

OTU14 was enriched in both Amansia and Halimeda treatments. Queries all >250 bp and expect scores all <e05.