Table 5. Origins of the sequences of virulence-associated factors.
| AVf | AVm | IOf | IOm | IPf | IPm | IRf | ATn | HFfmn | HLfmn | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Antibiotic resistance | ||||||||||||||||||||
| 1 | U | (424) | Actinobacteria-Streptoalloteichus | (1) | Alphaproteobacteria | (90) | U | (6) | U | (130) | Firmicutes | (8) | Gammaproteobacteria | (68) | Gammaproteobacteria | (8) | U | (15) | Gammaproteobacteria | (50) |
| 2 | Gammaproteobacteria | (85) | Gammaproteobacteria | (1) | U | (82) | Firmicutes | (5) | Firmicutes | (110) | Chlamydiae | (6) | U | (20) | U | (7) | Firmicutes | (9) | U | (39) |
| 3 | Firmicutes | (73) | Firmicutes | (49) | Gammaproteobacteria | (4) | Gammaproteobacteria | (50) | U | (5) | Alphaproteobacteria | (6) | Alphaproteobacteria | (5) | Epsilonproteobacteria | (4) | Firmicutes | (16) | ||
| 4 | Spirochaetes | (38) | Gammaproteobacteria | (44) | Alphaproteobacteria | (2) | Chlamydiae | (49) | Gammaproteobacteria | (4) | Firmicutes | (5) | Actinobacteria | (1) | Gammaproteobacteria | (4) | Cyanobacteria | (5) | ||
| 5 | Euryarchaeota | (26) | Crenarchaeota | (17) | Cyanobacteria | (1) | Cyanobacteria | (44) | Cyanobacteria | (3) | Cyanobacteria | (4) | Betaproteobacteria | (1) | Chlamydiae | (3) | Tenericutes | (2) | ||
| Pathogenicity island | ||||||||||||||||||||
| 1 | Gammaproteobacteria | (46) | U | (505) | U | (329) | U | (86) | U | (546) | U | (61) | Gammaproteobacteria | (164) | Gammaproteobacteria | (30) | U | (69) | Gammaproteobacteria | (183) |
| 2 | Firmicutes | (28) | Gammaproteobacteria | (98) | Alphaproteobacteria | (293) | Firmicutes | (29) | Firmicutes | (346) | Firmicutes | (37) | Firmicutes | (149) | U | (24) | Firmicutes | (38) | Firmicutes | (88) |
| 3 | U | (16) | Actinobacteria | (29) | Firmicutes | (152) | Gammaproteobacteria | (12) | Chlamydiae | (286) | Chlamydiae | (36) | U | (59) | Actinobacteria | (15) | Chlamydiae | (36) | U | (58) |
| 4 | Betaproteobacteria | (9) | Alphaproteobacteria | (18) | Gammaproteobacteria | (80) | Tenericutes | (9) | Gammaproteobacteria | (165) | Bacteroidetes | (19) | Alphaproteobacteria | (12) | Alphaproteobacteria | (13) | Alphaproteobacteria | (23) | Alphaproteobacteria | (13) |
| 5 | Alphaproteobacteria | (3) | Cyanobacteria | (12) | Bacteroidetes | (32) | Alphaproteobacteria | (8) | Epsilonproteobacteria | (140) | Epsilonproteobacteria | (17) | Cyanobacteria | (11) | Betaproteobacteria | (7) | Epsilonproteobacteria | (19) | Cyanobacteria | (13) |
| Virulence protein | ||||||||||||||||||||
| 1 | Gammaproteobacteria | (192) | Gammaproteobacteria | (51) | Alphaproteobacteria | (291) | Gammaproteobacteria | (81) | U | (625) | U | (60) | Gammaproteobacteria | (14) | U | (35) | U | (96) | Gammaproteobacteria | (197) |
| 2 | U | (55) | U | (14) | U | (238) | U | (34) | Firmicutes | (411) | Firmicutes | (44) | U | (14) | Gammaproteobacteria | (28) | Firmicutes | (68) | U | (116) |
| 3 | Firmicutes | (34) | Firmicutes | (12) | Firmicutes | (92) | Alphaproteobacteria | (23) | Chlamydiae | (285) | Chlamydiae | (27) | Firmicutes | (9) | Alphaproteobacteria | (8) | Chlamydiae | (46) | Firmicutes | (86) |
| 4 | Betaproteobacteria | (22) | Actinobacteria | (3) | Gammaproteobacteria | (90) | Deltaproteobacteria | (21) | Epsilonproteobacteria | (159) | Gammaproteobacteria | (24) | Alphaproteobacteria | (4) | Firmicutes | (8) | Cyanobacteria | (26) | Cyanobacteria | (35) |
| 5 | Bacteroidetes | (7) | Betaproteobacteria | (2) | Tenericutes | (25) | Firmicutes | (15) | Gammaproteobacteria | (117) | Epsilonproteobacteria | (19) | Cyanobacteria | (1) | Betaproteobacteria | (6) | Gammaproteobacteria | (18) | Alphaproteobacteria | (15) |
Numbers in parentheses indicate the total number of sequences. U, Unclassified.