Table 3.

Cluster size inference with the single-locus model: The top 20 most associated SNPs ranked by cluster $p_{\mathrm{F}\mathrm{W}\mathrm{E}}^{\text{brain}}$ from permutation.

Chr	SNP (gene)	# of clusters	Largest cluster in RESELs (voxels)	Min. puc in the largest cluster	Min. cluster $p_{\mathrm{F}\mathrm{W}\mathrm{E}}^{\text{brain}}$
16	rs7196505	5	12.8028 (1451)	8.271 × 10−7	3.535 × 10−6
16	rs2160315	9	12.1533 (1392)	1.310 × 10−6	4.330 × 10−6
5	rs4866878	4	10.7658 (1495)	1.163 × 10−8	6.933 × 10−6
11	rs490592	8	10.7446 (1406)	2.434 × 10−7	6.986 × 10−6
8	rs2279970	18	9.6840 (1049)	3.429 × 10−8	1.044 × 10−5
11	rs555097	24	9.6079 (1363)	8.762 × 10−7	1.076 × 10−5
8	rs10504140 (ST18)	19	8.8353 (1604)	1.179 × 10−7	1.485 × 10−5
5	rs4296809	4	8.5050 (1155)	4.200 × 10−9	1.719 × 10−5
2	rs2300477 (MEIS1)	23	8.4740 (926)	7.728 × 10−8	1.743 × 10−5
3	rs2929358 (AK097644)	18	8.1639 (1099)	2.117 × 10−7	2.010 × 10−5
12	rs1108923 (ACCN2)	4	7.8121 (993)	1.789 × 10−6	2.377 × 10−5
8	rs4639533 (ST18)	14	7.6760 (1628)	2.046 × 10−7	2.542 × 10−5
2	rs1347044 (NAP5)	4	7.4795 (685)	1.546 × 10−5	2.805 × 10−5
3	rs303860 (C3orf31)	1	7.2479 (1566)	5.894 × 10−7	3.160 × 10−5
11	rs10501511	2	7.1783 (1376)	5.453 × 10−7	3.278 × 10−5
18	rs17525599 (AL833817)	7	7.1288 (1192)	5.036 × 10−7	3.365 × 10−5
8	rs7001339	7	7.1250 (1356)	9.435 × 10−7	3.372 × 10−5
19	rs10402592 (SPC24)	10	7.1123 (1421)	3.132 × 10−7	3.394 × 10−5
1	rs4839223 (SLC6A17)	9	6.9098 (1273)	1.082 × 10−6	3.786 × 10−5
5	rs13154903	5	6.8379 (1311)	4.169 × 10−8	3.939 × 10−5