Table 2.
Twenty most differentially expressed genes with higher expression in MGR stage relative to YNG stage
| Accession | Gene annotation1 | YNG/MGR Fold-change2 | q-value3 |
|---|---|---|---|
| AT3G13520 |
ARABINOGALACTAN PROTEIN 12 (AGP12) |
−6.8 |
3.1E-02 |
| AT1G80170 |
putative polygalacturonase (pectinase) |
−7.3 |
1.4E-02 |
| AT1G09540 |
MYB DOMAIN PROTEIN 61 (MYB61) |
−7.4 |
2.6E-02 |
| AT3G05880 |
RARE-COLD-INDUCIBLE 2A (RCI2A) |
−7.5 |
1.3E-02 |
| AT1G77330 |
similar to 1-aminocyclopropane-1-carboxylate oxidase |
−7.5 |
1.9E-02 |
| AT1G72430 |
Auxin responsive SAUR protein |
−8.0 |
3.2E-02 |
| AT4G23496 |
SPIRAL1-LIKE5 (SP1L5) |
−8.1 |
4.7E-02 |
| AT4G03205 |
SOUL heme-binding family protein |
−8.1 |
1.9E-02 |
| AT1G67865 |
unknown protein |
−8.2 |
3.4E-02 |
| AT4G26320 |
ARABINOGALACTAN PROTEIN 13 (AGP13) |
−8.8 |
1.9E-02 |
| AT3G19710 |
BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4) |
−9.6 |
1.5E-02 |
| AT5G48560 |
basic helix-loop-helix (bHLH) family protein |
−9.9 |
4.5E-02 |
| AT3G55240 |
Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype |
−10.0 |
1.5E-02 |
| AT1G74670 |
putative gibberellin-responsive protein (GASA6) |
−10.2 |
3.3E-02 |
| AT4G30270 |
MERISTEM-5 (MERI5B) |
−11.5 |
1.6E-02 |
| AT1G74660 |
MINI ZINC FINGER 1 (MIF1) |
−12.0 |
4.9E-03 |
| AT4G29905 |
unknown protein |
−12.9 |
4.3E-02 |
| AT3G45160 |
unknown protein |
−15.3 |
1.1E-02 |
| AT5G05960 |
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein |
−24.2 |
1.5E-02 |
| AT5G42180 | peroxidase 64 (PER64) located in plant-type cell wall | −40.0 | 9.4E-04 |
1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.
2Genes ranked according to fold-change values derived from log2 ratios of YNG (numerator) and MGR (denominator).
3 Derived from false discovery-rate correction of p-values.