Table 4.
Twenty most differentially expressed genes with higher expression in CSS stage relative to MGR stage
| Accession | Gene annotation1 | MGR/CSS Fold-change2 | q-value3 |
|---|---|---|---|
| AT5G25110 |
CBL-INTERACTING PROTEIN KINASE 25 (CIPK25)(SnRK3.25) |
−5.1 |
1.8E-02 |
| AT2G43050 |
pectin methylesterase |
−5.5 |
2.8E-03 |
| AT4G30290 |
XYLOGLUCAN ENDOTRANSGLUCOSYLASE (XTH19) |
−5.5 |
2.8E-04 |
| AT5G59290 |
UDP-glucuronic acid decarboxylase 3 (UXS3) |
−5.6 |
5.8E-04 |
| AT2G38080 |
LACCASE 4 (IRX12) |
−6.0 |
4.1E-04 |
| AT2G37090 |
IRREGULAR XYLEM 9 (IRX9) |
−6.1 |
4.3E-04 |
| AT5G46340 |
REDUCED WALL ACETYLATION 1 (RWA1) |
−6.1 |
3.0E-03 |
| AT1G03740 |
S/T protein kinase |
−6.1 |
7.8E-06 |
| AT5G01360 |
TRICHOME BIREFRINGENCE-LIKE 3 (TBL3) |
−6.9 |
2.3E-03 |
| AT2G28315 |
Nucleotide/sugar transporter family protein |
−7.3 |
4.0E-03 |
| AT1G22480 |
plastocyanin-like domain-containing protein |
−7.8 |
3.6E-04 |
| AT5G17420 |
CESA7(IRX3) |
−8.8 |
1.6E-04 |
| AT3G18660 |
glucuronic acid substitution of xylan1 (GUX1) |
−9.0 |
5.7E-04 |
| AT4G18780 |
CESA8 (IRX1) |
−9.5 |
9.4E-04 |
| AT3G16920 |
CHITINASE-LIKE PROTEIN 2 (CTL2) |
−10.1 |
1.3E-05 |
| AT2G28110 |
FRAGILE FIBER 8 (FRA8) |
−10.3 |
4.8E-04 |
| AT2G03200 |
aspartyl protease family protein |
−10.4 |
9.6E-05 |
| AT1G63910 |
AtMYB103 |
−11.5 |
2.3E-03 |
| AT5G44030 |
CESA4 (IRX5) |
−11.5 |
5.6E-05 |
| AT2G45220 | pectin methylesterase | −38.4 | 1.8E-05 |
1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.
2Genes ranked according to fold-change values derived from log2 ratios of MGR (numerator) and CSS (denominator).
3 Derived from false discovery-rate correction of p-values.