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. 2013 Jan 25;13:14. doi: 10.1186/1471-2229-13-14

Table 5.

Twenty most differentially expressed genes with higher expression in CSS stage relative to OLD stage

Accession Gene annotation1 CSS/OLD Fold-change2 q-value3
AT1G12845
 unknown protein
 10.1
 4.1E-02
AT5G20630
 GERMIN 3 (GER3)
 6.5
 1.6E-02
AT3G07010
 pectate lyase family protein
 6.3
 7.8E-03
AT1G72610
 GERMIN-LIKE PROTEIN 1 (GER1)
 6.2
 4.0E-02
AT1G64660
 ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE (ATMGL)
 5.7
 9.6E-03
AT3G15720
 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
 5.3
 3.5E-02
AT1G80280
 hydrolase, alpha/beta-fold family protein
 5.3
 3.4E-02
AT1G68600
 unknown protein
 5.0
 4.3E-02
AT5G38430
 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)
 4.8
 4.3E-02
AT2G39010
 PLASMA MEMBRANE INTRINSIC PROTEIN 2E (PIP2E)
 4.8
 2.2E-02
AT2G38540
 LIPID TRANSFER PROTEIN 1 (LTP1)
 4.7
 2.8E-02
AT3G16240
 DELTA TONOPLAST INTEGRAL PROTEIN (DELTA-TIP)
 4.7
 2.2E-02
AT4G03205
 coproporphyrinogen oxidase activity in porphyrin biosynthetic process within chloroplast
 4.4
 3.9E-02
AT3G48970
 copper-binding family protein in metal ion transport
 4.3
 4.9E-02
AT1G75900
 family II extracellular lipase 3 (EXL3), carboxylesterase activity, acyltransferase activity
 4.3
 1.5E-02
AT2G05790
 glycosyl hydrolase family 17 protein
 4.2
 7.8E-03
AT5G38420
 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)
 4.2
 4.1E-02
AT1G68560
 ALPHA-XYLOSIDASE 1 (XYL1)
 4.2
 4.1E-02
AT5G22580
 unknown protein
 4.2
 2.8E-02
AT3G12610 DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100) 4.1 2.2E-02

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of CSS (numerator) and OLD (denominator).

3 Derived from false discovery-rate correction of p-values.