Table 2. Female sex-determining/differentiation gene inventory.
| L. menadoensis transcript | Gene location in L. chalumnae | Transcript prediction in L. chalumnae | ||||||||
| Gene | Accession | Length | CDS | Scaffold | N° exons3 | Divergence4 | Ka/Ks | ENSEMBL accession | Length | CDS |
| Aromatase | - | - | - | JH127307 | - | - | - | ENSLACT00000010703 | 1329 | 13292 |
| CTNNB1 | HF562326 | 3325 | 2346 | JH127054 | 15 | 0.702 | 0.000 | ENSLACT00000017335 | 3458 | 2346 |
| ERα | HF562327 | 2002 | 15412 | JH1292275 | >8 | 0.352 | NA | ENSLACT00000005056 | 396 | 3962 |
| ERβ | HF562328 | 3184 | 1689 | JH126564 | 9 | 0.159 | 0.000 | ENSLACT00000019235 | 2465 | 1689 |
| FOXL2 | - | - | - | JH127245 | - | - | - | ENSLACT00000012991 | 915 | 915 |
| FST | HF562329 | 2381 | 1044 | JH127291 | 6 | 0.221 | 0.000 | ENSLACT00000014112 | 2027 | 10322 |
| RSPO-1 | HF562330 | 4741 | 4252 | JH126592 | >5 | 0.626 | NA | ENSLACT00000019383 | 747 | 7472 |
| HF562331 | 4851 | 2692 | ||||||||
| WNT4 | - | - | - | JH126950 | - | - | - | ENSLACT00000017139 | 1068 | 1068 |
1
Fragmented contig. 2Partial CDS. 3Number of exons from the alignment of L. menadoensis transcripts to the L. chalumnae genome. Where the transcript carries only a partial CDS, the exon number is partial. 4Divergence between the two coelacanth sequences calculated as p-distance x100. 5The ERα gene in the L. chalumnae genome is split among scaffolds JH129227, JH129408, JH129637, and JH133026.