Table 1.
List of gene set libraries ranked by number of terms
| |
|
Gene |
Mean genes per |
|---|---|---|---|
| Gene-set library | Terms | coverage | term |
| Down-regulated CMAP |
6100 |
8695 |
100 |
| Up-regulated CMAP |
6100 |
11251 |
100 |
| HMDB Metabolites |
3906 |
3729 |
47.1495 |
| GeneSigDB |
2139 |
23729 |
126.6947 |
| Human CoR Complexome |
1796 |
10231 |
158.2778 |
| CORUM |
1673 |
2741 |
4.6934 |
| Cancer Cell Line Encyclopedia |
967 |
15797 |
176.2079 |
| GO Biological Process |
941 |
7683 |
78.4676 |
| MSigDB Computational |
858 |
10061 |
106.4207 |
| Genome Browser PWMs |
615 |
13362 |
275.1447 |
| MGI Mammalian Phenotype Top 4 |
476 |
10496 |
201.7101 |
| Kinase Enrichment Analysis KEA |
474 |
4533 |
36.7089 |
| ENCODE TF ChIP-seq |
434 |
19851 |
1064.055 |
| GO Molecular Function |
402 |
8469 |
121.8284 |
| Chromosome Location |
386 |
32740 |
84.8187 |
| PPI Hub Proteins |
385 |
16487 |
247.2286 |
| Histone Modifications ChIP-seq |
356 |
21921 |
1232.129 |
| TRANSFAC/JASPAR PWMs |
335 |
42887 |
1249.63 |
| Pfam InterPro Domains |
311 |
7588 |
35.3408 |
| BioCarta Pathways |
249 |
1295 |
17.6506 |
| ChIP Enrichment Analysis ChEA |
240 |
42574 |
1455.7 |
| microRNA TargetScan |
222 |
7504 |
154.6036 |
| GO Cellular Component |
205 |
7325 |
172.1268 |
| KEGG Pathways |
200 |
4128 |
48.44 |
| WikiPathways |
199 |
2854 |
38.8191 |
| MSigDB Oncogenic Signatures |
189 |
11250 |
165.709 |
| OMIM Expanded |
187 |
2178 |
88.9198 |
| Mouse Gene Atlas |
96 |
20686 |
660.1354 |
| NCI-60 Cancer Cell Lines |
93 |
12232 |
343.3333 |
| OMIM Disease |
90 |
1759 |
25.0667 |
| VirusMINT |
85 |
851 |
14.8824 |
| Human Gene Atlas |
84 |
15381 |
449.7619 |
| SILAC Phosphoproteomics |
84 |
7732 |
341.869 |
| Reactome Pathways |
78 |
3185 |
72.5128 |
| MGI Mammalian Phenotype Top 3 | 71 | 10406 | 717.4366 |