Table 3.
Predominant transcripts in the cDNA libraries generated from P. ginseng roots, stems, leaves and flowers
| Unigene ID | Subject | Annotation | No. of reads |
|---|---|---|---|
|
Root | |||
| contig03234 |
vvi:100267971 |
Hypothetical protein |
946 |
| contig03264 |
vvi:100267971 |
Hypothetical protein |
921 |
| contig08673 |
sp|O24339| |
Catalase |
904 |
| contig 08301 |
sp|P24669 |
Superoxide dismutase |
872 |
| contig01891 |
gb|ACH72969.1| |
Latex-like protein |
862 |
| contig02117 |
sp|P83618| |
Ribonuclease-like storage protein |
846 |
| contig08057 |
ref|XP_002467304.1| |
Hypothetical protein |
838 |
| contig08066 |
ref|XP_002488947.1| |
Hypothetical protein |
788 |
| contig08059 |
pop:POPTR_265927 |
Hypothetical protein |
780 |
| contig09140 |
vvi:100257371 |
1,4-alpha-glucan branching enzyme |
776 |
|
Stem | |||
| contig01514 |
sp|Q9C8U9| |
Phloem protein 2-like protein |
993 |
| contig01413 |
gb|ABF48477.1| |
Panax ginseng dehydrin 4 |
953 |
| contig04579 |
pop:POPTR_820375 |
Hypothetical protein |
948 |
| contig02872 |
sp|P04778| |
Chlorophyll a-b binding protein 1 |
941 |
| contig04578 |
emb|CAH59408.1| |
Hypothetical protein |
920 |
| contig02875 |
sp|P27495| |
Chlorophyll a-b binding protein 40 |
915 |
| contig04448 |
sp|Q42580| |
Peroxidase 21 |
911 |
| contig02517 |
pop:POPTR_718004 |
Hypothetical protein |
890 |
| contig02408 |
ref|XP_002299525.1| |
Hypothetical protein |
887 |
| contig02549 |
ref|YP_003934332.1| |
Photosystem II PsbK protein |
859 |
|
Leaf | |||
| contig00303 |
rcu:RCOM_0030020 |
Ribulose bisphosphate carboxylase small chain |
19345 |
| contig00304 |
sp|P10795| |
Ribulose bisphosphate carboxylase small chain 1A |
18860 |
| contig00004 |
rcu:RCOM_1571640 |
Ribulose bisphosphate carboxylase small chain 1B |
11627 |
| contig00270 |
rcu:RCOM_1158790 |
Ribulose bisphosphate carboxylase small chain |
7879 |
| contig00520 |
rcu:RCOM_1158790 |
Ribulose bisphosphate carboxylase small chain |
6692 |
| contig00325 |
sp|P23540| |
Ribonuclease |
3909 |
| contig01392 |
sp|P49108| |
Photosystem II 10 kDa polypeptide |
3202 |
| contig00936 |
sp|P27497| |
Chlorophyll a-b binding protein M9 |
2041 |
| contig00949 |
sp|P13851| |
Chlorophyll a-b binding protein 1 |
1955 |
| contig02266 |
ref|XP_002273037.1| |
Hypothetical protein |
1785 |
|
Flower | |||
| contig01060 |
rcu:RCOM_1158790 |
Ribulose bisphosphate carboxylase small chain |
999 |
| contig04296 |
sp|P92919| |
Chlorophyll a-b binding protein |
942 |
| contig01114 |
sp|Q40250| |
Ribulose bisphosphate carboxylase small chain |
932 |
| contig26298 |
zma:100192931 |
Histone H4 |
919 |
| contig04288 |
sp|P07371| |
Chlorophyll a-b binding protein AB80 |
887 |
| contig05604 |
ref|XP_002312129.1| |
Hypothetical protein |
881 |
| contig33033 |
pop:POPTR_826664 |
Hypothetical protein |
830 |
| contig00507 |
gb|AAX40470.1| |
Hypothetical protein |
788 |
| contig04848 |
sp|Q40519| |
Photosystem II 10 kDa polypeptide |
772 |
| contig14522 | sp|P50156| | Probable aquaporin TIP1-1 | 754 |