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. 2013 Jan 18;14:24. doi: 10.1186/1471-2105-14-24

Table 2.

Quality assessment by 3 reference-independent measures

Dataset Measure DaliLite TM-align CE MICAN DEDAL SNAP GANGSTA+ SCALI MASS SAMO
 
 Nali
 83.5
 85.1
 76.5
 82.9
 74.1
 73.3
 78.7
 63.0
 67.4
 81.8
MALIDUP-sq
 Nali′
 83.5
 80.5
 76.2
 82.9
 74.1
 73.3
 78.7
 63.0
 53.9
 57.9
 
 RMSD
 2.73
 2.61
 2.87
 2.60
 2.46
 2.05
 2.65
 2.35
 1.65
 2.55
 
 Ngap
 5.5
 8.8
 3.9
 4.1
 4.0
 5.0
 3.2
 4.2
 18.6
 32.5
 
 Nali
 80.4
 81.2
 54.1
 81.0
 69.7
 68.3
 75.5
 58.0
 62.0
 83.2
MALISAM-sq
 Nali′
 80.4
 73.0
 53.8
 81.0
 69.7
 68.3
 75.5
 58.0
 40.2
 41.7
 
 RMSD
 3.12
 3.07
 3.09
 3.01
 2.95
 2.32
 2.93
 2.60
 1.85
 2.93
 
 Ngap
 4.8
 9.5
 2.3
 3.6
 3.8
 4.6
 3.4
 3.5
 17.4
 33.4
 
 Nali
 61.4
 60.5
 —
 81.6
 73.6
 72.9
 73.3
 60.2
 67.6
 77.5
MALIDUP-ns
 Nali′
 61.4
 55.5
 —
 81.6
 73.6
 72.9
 73.2
 60.2
 53.8
 41.2
 
 RMSD
 2.73
 2.94
 —
 2.57
 2.46
 2.01
 2.47
 2.37
 1.65
 2.84
 
 Ngap
 3.4
 7.6
 —
 4.0
 4.0
 5.2
 3.4
 4.1
 18.9
 42.1
 
 Nali
 63.0
 63.2
 —
 79.9
 69.1
 68.2
 70.0
 57.6
 61.7
 81.6
MALISAM-ns
 Nali′
 63.0
 54.8
 —
 79.9
 69.1
 68.2
 69.9
 57.6
 39.7
 35.4
 
 RMSD
 3.47
 3.36
 —
 2.97
 3.01
 2.32
 2.87
 2.64
 1.86
 2.99
  Ngap 3.5 8.1 — 3.7 3.8 4.7 3.3 3.6 17.5 36.8