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. 2013 Feb 5;14:81. doi: 10.1186/1471-2164-14-81

Figure 3.

Figure 3

Comparison of genome trees generated by core and pan-genomes. a. The core genome phylogeny was created using ClonalFrame. b. The pan-genome tree was created using hierarchical clustering of a Manhattan distance matrix based on the gene presence/absence matrix. The scale below the pan-genome tree indicates Manhattan distances. Both methods separated the strains into two main clades (1 and 2).