Table 2.
CodY-binding sites of the strongest binding regions identified by IDAP-Seq
| Putative target gene(s) | Site start | Site end | Site length (nt) | Site location with respect to target gene(s) |
| bcaP | ND | 1023179 | ND | Upstream |
| 1023296 | 1023311 | 16 | Upstream | |
| gcp/ydiF | ND | 644347 | ND | Downstream/downstream |
| 644425 | 644441 | 17 | Downstream/downstream | |
| ggaB | 3669784 | 3669800 | 17 | Internal |
| ispA | 1386336 | 1386351 | 16 | Internal |
| mntB/mntA | 3145191 | 3145209 | 19 | Upstream/internal |
| 3145428 | 3145443 | 16 | Internal | |
| purC | 701563 | 701582 | 20 | Upstream |
| rapA | 1316109 | 1316124 | 16 | Internal |
| trmFO/xerC | 1687094 | 1687112 | 19 | Internal/upstream |
| xkdB | 1322066 | 1322077 | 12 | Internal |
| ybeC | 231569 | 231587 | 19 | Internal |
| ybgE | ND | 258908 | ND | Upstream |
| 258968 | 258991 | 24 | Upstream | |
| yrdB | 2734366 | 2734380 | 15 | Upstream |
| yuiA | 3299878 | 3299893 | 16 | Upstream |
| yvdB | 3561523 | 3561540 | 18 | Internal |
| yvyD | 3631655 | 3631671 | 17 | Upstream |
See also Dataset S1A. Genes are presented alphabetically. A nearby gene is specified for some internal sites. Coordinates are specified according to the GenBank entry NC_000964.3. ND, site boundary and length could not be determined because of the presence of a nearby CodY-binding site.