Table 4.
Small RNAs with nucleotide lengths larger than 25 nt
| smallRNA ID | Sequence | Length (nt) | Hit in the piRNABank | E-value |
|---|---|---|---|---|
| iso_smRNA1 |
CCCTCGGTTCTGGCGTCAAGCGGGCCGGC |
29 |
No hit |
- |
| iso_smRNA2 |
GCATGTGGTTCAGTGGTAGAATTCTCG |
27 |
hsa_piR_018570 |
0.0053 |
| iso_smRNA3 |
GCATTGGTGGTTCAGTGGTAGAATTCTCGC |
30 |
dr_piR_0029993 |
0.0000065 |
| iso_smRNA4 |
GCATTGTGGTTCAGTGGTAGAATTCTCGCC |
30 |
hsa_piR_018570 |
0.00065 |
| iso_smRNA5 |
GCCCGGCTAGCTCAGTCGGTAGAGCATGA |
29 |
hsa_piR_000794 |
0.000017 |
| iso_smRNA6 |
GGGTTCGATTCCCGGTCAGGGAACCA |
26 |
No hit |
- |
| iso_smRNA7 |
GGTTCCATGGTGTAATGGTTAGCACTCTG |
29 |
hsa_piR_020582 |
0.000019 |
| iso_smRNA8 |
GGTTCTATGGTGTAATGGTTAGCACTCTG |
29 |
hsa_piR_020582 |
0.00011 |
| iso_smRNA9 |
GTTGTCGTGGCCGAGTGGTTAAGGCAATG |
29 |
hsa_piR_015249 |
0.0054 |
| iso_smRNA10 |
GTTTCCGTAGTGTAGTGGTTATCACGTTCG |
30 |
rno_piR_005901 |
0.0000065 |
| iso_smRNA11 |
TCCCATATGGTCTAGCGGTTAGGATTCCT |
29 |
dr_piR_0027014 |
0.018 |
| iso_smRNA12 |
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC |
30 |
ona_piR_166322 |
0.0000065 |
| iso_smRNA13 |
TCCCTGTGGTCTAGTGGTTAGGATTCGGCG |
30 |
ona_piR_166322 |
0.00049 |
| iso_smRNA14 |
TCCTCGTATAGTGGACAGTATCTCCGCC |
28 |
No hit |
- |
| iso_smRNA15 |
TGAAAGACAACTCTTAGCGGTGGATC |
26 |
No hit |
- |
| iso_smRNA16 |
TGCGACCTCAGATCAGACGAGACAACCC |
28 |
dr_piR_0026826 |
0.0056 |
| iso_smRNA17 | TGGCTTCCTAAGCCAGGGATTGTGGG | 26 | No hit | - |
E-value smaller than 0.05 is shown here.