Table 1.
Validation of micro-array data by RNA deep sequencing analysis
| Gene | Sample |
Micro-array |
RNA deep sequencing |
||
|---|---|---|---|---|---|
| Fold change | P-value | Fold change | P-value | ||
|
atf3 |
S. epidermidis versus non-injected (5DPI) |
+ 2.83 |
2.49E-09 |
+ 4.77 |
1.83E-44 |
|
cxcl-c1c |
S. epidermidis versus non-injected (5DPI) |
+ 5.77 |
1.77E-14 |
+ 6.74 |
4.07E-25 |
|
HPX (1 of 2) |
S. epidermidis versus non-injected (5DPI) |
+ 10.10 |
1.60E-11 |
+ 6.00 |
1.13E-51 |
|
il1b |
S. epidermidis versus non-injected (5DPI) |
+ 11.94 |
1.22E-10 |
+ 8.54 |
9.97E-38 |
|
lect2l |
S. epidermidis versus non-injected (5DPI) |
+ 6.99 |
1.80E-20 |
+ 3.12 |
1.17E-21 |
|
mfap4 (4 of 13) |
S. epidermidis versus non-injected (5DPI) |
+ 21.27 |
4.15E-41 |
+ 3.67 |
4.30E-09 |
|
mmp9 |
S. epidermidis versus non-injected (5DPI) |
+ 5.18 |
9.73E-20 |
+ 10.71 |
1.54E-95 |
| mmp13a | S. epidermidis versus non-injected (5DPI) | + 7.35 | 1.07E-18 | + 15.30 | 6.03E-82 |
Shown are 8 representative immune-related genes that were significantly expressed in the micro-array and RNA deep sequencing experiment.