TABLE 1.
Genome characteristics of three A. hydrophila strains and four closely related Aeromonas species as determined by the RAST annotation pipeline
| Organism | Source | No. of contigs |
No. of bp |
No. of CDSs |
No. of RNAs |
No. of tRNAs |
No. of rRNAs |
No. of rRNA operonsb |
G+C content (%) |
|---|---|---|---|---|---|---|---|---|---|
| A. hydrophila E1 | Wound infection | 249 | 4,754,562 | 4,373 | 76 | 70 | 6 | 10 | 61.3 |
| A. hydrophila E2 | Wound infection | 426 | 4,564,644 | 4,241 | 60 | 56 | 4 | 10 | 61.5 |
| A. hydrophila ATCC 7966T | Fishy milk | 1 | 4,744,448 | 4,279 | 158 | 127 | 31 | 10 | 61.6 |
| A. aquariorum AAK1 | Septicemia, necrotizing fasciitis |
36 | 4,763,532 | 4,275 | 100 | 88 | 12 | 10 | 61.8 |
| A. veronii B565 | Pond | 1 | 4,551,783 | 3,936 | 133 | 102 | 31 | 10 | 58.7 |
| A. salmonicida A449 | Furunculosis, brown trout | 6a | 5,040,536 | 4,306 | 137 | 109 | 28 | 9 | 58.5 |
| A. caviae Ae398 | Diarrhea, child | 149 | 4,439,218 | 3,912 | 78b | 72 | 6 | ? | 61.4 |
a
Includes one chromosome and five plasmids.
b
rRNA operon numbers for draft genomes were estimated on the basis of the presence of full and partial 16S and 23S rRNA genes and comparison to A. hydrophila ATCC 7966T.