TABLE 3.
Presence or absence of protein CDSs in the genomes of three strains of A. hydrophila and four closely related Aeromonas species
| Putative protein CDS |
A. hydrophila ATCC 7966T |
A. hydrophila E1 |
A. hydrophila E2 |
A. aquariorum AAK1 |
A. veronii B565 |
A. salmonicida A449 |
A. caviae Ae398 |
|---|---|---|---|---|---|---|---|
| Metabolic and related | |||||||
| pgt utilization operon | + | + | + | + | − | − | − |
| Maltose homolog PTS, glucosidase | + | − | + | + | + | + | − |
| N-Acetylgalactosamine, aga | + | + | + | + | + | − | − |
| N-Acetylmuramic acid transporter | + | − | + | − | − | − | + |
| Xanthosine | + | + | + | − | − | − | − |
| Uncharacterized hexose-P PTS, uhpABC | + | + | + | + | + | + | − |
| Arabinose utilization | + | + | + | − | − | + | − |
| 2-Aminoethylphosphonate | + | + | + | + | + | − | − |
| Xanthine, yge, yqe cluster | + | + | + | + | + | − | − |
| Mannose transporter | + | + | + | − | − | − | − |
| l-Lactate utilization | + | + | + | + | − | − | + |
| l-Cystine transporter | + | + | + | − | − | − | + |
| Glutamate-aspartate transporter | − | + | − | + | − | − | + |
| Taurine transporter | + | − | + | + | − | − | − |
| Cytochrome o | + | + | + | + | − | + | + |
| Methylamine homolog utilization | + | + | + | + | + | − | − |
| Benzoate, N-acetylglucosamine | + | + | + | + | + | − | + |
| Phosphonate transporter | + | − | − | + | − | + | − |
| Decaheme cytochrome c, nrf | + | + | + | + | − | − | − |
| Cysteine operon, cysPTWA | + | + | + | + | − | + | + |
| Glutamine/glutamate transporter | + | + | + | + | − | + | + |
| Chemotaxis cluster, AHA_2527-2538 | + | + | + | − | − | − | − |
| N-Ribosylnicotinamide transporter | + | + | + | + | + | + | − |
| NO reductase | + | + | + | + | − | + | + |
| Dienelactone hydrolase | + | − | + | − | − | − | − |
| Quaternary ammonium compound resistance, propanediol, ethanolamine |
+ | − | + | + | − | − | − |
| Anaerobic sulfite reductase | + | + | + | − | + | − | − |
| Tungstate transporter | + | + | + | + | + | + | − |
| Tetrathionate reductase | + | + | + | + | − | − | + |
| Nitrate-nitrite reductase | + | + | + | − | − | − | + |
| Appendages | |||||||
| CFA/I (α C/U) fimbriae, AHA_0060 | + | + | + | + | − | + | + |
| CFA/I (α C/U) fimbriae, AHA_1021 | + | − | + | − | + | + | − |
| P (π C/U) fimbriae, AHA_0521 | + | + | + | + | + | + | − |
| Tap type IV pilus | + | + | + | + | + | + | + |
| TAD Flp pilus | + | − | − | − | + | + | − |
| MSHA BFP type IV pilus | + | + | + | + | + | + | + |
| Polar flagellum | + | + | + | + | + | + | + |
| Lateral flagellum | − | + | − | − | − | + | − |
| Toxins and exoenzymes | |||||||
| T3SS, aexU | − | + | − | − | − | + | − |
| T6SS, hcp | + | + | + | + | − | + | − |
| Cytotonic enterotoxin/lipase, alt | + | + | + | + | + | + | + |
| Cytotoxic enterotoxin/hemolysin, act | + | + | − | + | + | + | − |
| Cytotonic enterotoxin, ast | + | + | + | − | − | − | − |
| Enolase | + | + | + | + | + | + | + |
| Elastase | + | + | + | + | + | + | + |
| RTX toxin, AHA_1359, and transporter cluster | + | − | + | + | − | − | − |
| FHA family, RTX toxin | − | + | − | − | − | − | − |
| Pore-forming cytolysin/hemolysin, hlyA | + | + | + | + | − | + | − |
| Phospholipase/lecithinase/hemolysin-GCAT | + | + | + | + | + | + | + |
| Capsule | − | + | + | + | + | − | − |
| Antibiotic and multidrug resistance | |||||||
| Macrolide-specific ABC efflux pump | + | + | + | + | − | + | + |
| Polymyxin B resistance (arn) | + | + | + | + | − | + | − |
| Acr family RND efflux pump, AHA_2959-60 | + | + | + | + | + | + | − |
| ABC-type multidrug transport system, AHA_0484-6 |
+ | + | + | + | − | + | − |
| MATE efflux pump | + | + | − | + | + | + | + |
| OmpK-AmpG | + | + | + | + | + | + | + |
| NodT family RND efflux pump | − | + | − | − | − | − | + |
| Acriflavin RND transporter | + | − | − | + | + | − | + |