Skip to main content
. Author manuscript; available in PMC: 2013 May 1.
Published in final edited form as: Nat Genet. 2011 Jul 10;43(8):761–767. doi: 10.1038/ng.873

Table 3.

Evidence for secondary signals of association at IL23R, ERAP1 and HLA-B27

WTCCC2 discovery sample
 TASC discovery sample
 Replication sample
 Combined
Chr. SNP ID Positiona Conditional
on SNP		 Effect
allele		 P OR 95% CI P OR 95% CI P OR 95% CI P
1p31 rs11209032 67,512,680 rs11209026 A 7.9 × 10−6 1.20 1.11–1.30 0.0018 1.17 1.06–1.29 0.0018 1.14 1.05–1.23 5.1 × 10−10
5q15 rs10050860 96,147,966 rs30187 C 0.0025 1.17 1.06–1.30 0.026 1.16 1.02–1.33 0.00023 1.22 1.10–1.35 1.9 × 10−7
6p21 rs13202464 31,452,562 rs4349859b A 3.7 × 10−7 0.32 0.21–0.47 2.1 × 10−15 0.15 0.09–0.23 2.0 × 10−9 0.34 0.25–0.47 1.1 × 10−29
a

NCBI human genome build 36 coordinates.

b

We assumed a dominant model for the risk allele at this SNP.