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. 2013 Jan 31;5(2):550–567. doi: 10.3390/v5020550

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© 2013 by the authors; licensee MDPI, Basel, Switzerland.

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).

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RDP screenshots displaying the possible recombination events on the isolates 11036 and 11052. Each panel displays the pairwise identities among the possible mosaic and its putative parents. Pairwise identity refers to the average pairwise sequence identity within a 60 nt sliding window moved one nucleotide at a time along the alignment of the three sequences. The pink area demarcates the potential recombination regions. (a) Comparisons among the putative mosaic 11036 and its putative parents, 1116 and 1107; (b) Comparisons among the putative mosaic 11052 and its putative parents, 9011 and H120.