Table 4.
Secreted proteins with non-synonymous substitutions between UK isolates PST-87/7 and PST-08/21 and in tribes ranking within the top 100 potential effector tribes
|
Gene ID |
Tribe no. |
Tribe ranking |
Length (amino acids) |
Similarity to HESPs or fungal AVRs |
1 FIR ≥10 Kb |
No. of repeat units |
SCR protein |
Effector motifs (amino acid position) |
NLS signal |
PFAM mapping |
Infected material (reads) |
Haust. 1 (reads) |
Haust. 2 (reads) |
Enrichment in haustoria |
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fold change (log2) | P value (adj) | ||||||||||||||
| PST130_14637 |
9 |
6 |
609 |
No |
No |
10 |
No |
- |
No |
No |
0 |
0 |
4 |
1.02 |
0.68 |
| PST21_19014 |
11 |
14 |
167 |
No |
No |
0 |
No |
Y/F/WxC(85); LIAR(32) |
No |
Yes |
535 |
120 |
534 |
-0.38 |
0.87 |
| PST887_17743 |
11 |
14 |
185 |
No |
No |
0 |
No |
Y/F/WxC(103); LIAR(32) |
No |
Yes |
904 |
167 |
695 |
-0.61 |
0.70 |
| PST130_00418 |
8 |
17 |
176 |
No |
No |
20 |
No |
- |
No |
No |
6 |
0 |
361 |
4.15 |
1.00 |
| PST21_12116 |
74 |
20 |
455 |
No |
No |
0 |
No |
- |
No |
Yes |
298 |
3708b |
34272b |
5.99 |
<0.001 |
| PST130_05023 |
351 |
22 |
281 |
No |
No |
6 |
No |
- |
No |
Yes |
2475a |
7368b |
62158c |
3.85 |
0.011 |
| PST21_18360 |
437 |
23 |
394 |
No |
No |
0 |
No |
- |
No |
No |
480 |
5957b |
15413b |
5.08 |
0.001 |
| PST130_00285 |
317 |
25 |
207 |
No |
No |
0 |
No |
- |
No |
Yes |
919 |
6699b |
36240b |
4.77 |
0.001 |
| PST21_15642 |
308 |
28 |
102 |
No |
No |
0 |
Yes |
- |
No |
No |
209 |
6002b |
6286a |
5.96 |
<0.001 |
| PST21_17946 |
17 |
39 |
177 |
No |
No |
3 |
No |
- |
No |
No |
396 |
417 |
3015 |
2.21 |
0.19 |
| PST21_04206 |
456 |
58 |
515 |
No |
No |
0 |
No |
- |
No |
Yes |
2563a |
513 |
1806 |
-0.70 |
0.65 |
| PST21_20471 |
21 |
83 |
376 |
No |
No |
13 |
No |
- |
No |
No |
24 |
7 |
34 |
0.05 |
0.69 |
| PST43_15488 |
111 |
94 |
94 |
No |
No |
0 |
Yes |
Y/F/WxC(23) |
No |
Yes |
399 |
0 |
76 |
-3.81 |
0.17 |
| PST21_15274 | 111 | 94 | 91 | No | No | 0 | Yes | Y/F/WxC(23) | No | No | 64 | 1 | 24 | -2.46 | 0.17 |
HESPs, Haustorial expressed secreted proteins. FIR, flanking intergenic region. SCR, small cysteine-rich. NLS, nuclear-localization signal. Haust, Haustorial library.
Genes expressed in the top 10 (a), 5 (b) and 1% (c) in a particular RNAseq dataset.