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. 2013 Apr 19;13:86. doi: 10.1186/1471-2148-13-86

Table 2.

Predicted binding pockets of the adenylation domain of McyA2

Strain
Binding pocket
Score %(a) Predicted(a) Activated
  235 236 239 278 299 301 322 330 331 517
Anabaena sp. 90
D
L
F
N
N
A
L
T
Y
K
100
Ala
Ala
Microcystis aeruginosa NIES-843
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala
Microcystis aeruginosa PCC7806
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala
Microcystis aeruginosa UV027
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala
Microcystis aeruginosa K-139
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala
Nostoc sp. 152
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala*
Phormidium sp. DVL1003c
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala
Planktothrix rubescens NIVA-CYA 98
-
-
-
-
-
-
-
-
-
-
100
Ala
Ala
Planktothrix agardhii NIVA-CYA 126/8
-
-
-
-
-
-
-
S
-
-
90
Ala
Ala
Microcystis sp. RST 9501
-
-
-
-
-
G
-
I
C
-
70
Cys
Leu, Met
Microcystis aeruginosa NPLJ-4
-
-
-
-
-
G
-
I
C
-
70
Cys
Leu, Met ±
Nostoc sp. UK89IIa
-
A
W
F
L
G
N
V
V
-
100
Leu
Leu
Phormidium sp. CENA270 - A W F L G N V V - 100 Leu Leu

The adenylation domain of McyA2 is responsible for amino acid activation in position one of microcystins.

(a) Prediction obtained using the NRPSpredictor2 program [72,73]. Trace amounts of *Serine and ± Valine or Phenylalanine detected in LC-MS/MS.