Table 2.
Transcriptome sequencing in Pinus spp.
| Pinus spp. | Platform or approach | Libraries | Reads or ESTs | Mean length | Unigenes | References |
|---|---|---|---|---|---|---|
|
P. taeda |
cDNA clones |
xylem |
1 097 |
510 |
736 |
[32] |
|
P. taeda |
cDNA clones |
xylem |
59 797 |
364 |
20 377 |
[33] |
|
P. taeda |
cDNA clones |
root |
12 918 |
555 |
6 202 |
[35] |
|
P. taeda |
cDNA clones |
embryos |
68 721 |
689 |
12 154 |
[3] |
|
P. radiata |
cDNA clones |
xylem |
6 389 |
624 |
3 304 |
[29] |
|
P. contorta |
GS XL R70 |
needles and conelets |
586 732 |
306 |
17 000 |
[9] |
|
P. pinaster |
Sanger and GS-FLX |
different tissues |
951 641 |
597 |
55 332 |
[2] |
| P.densata | Illumina | needles | 3 968 794 | 84 950 | [67] |