Table 3.
Negative binomial fit parameters m and r as provided by the R’s “fitdistr” function (see Additional file1)
|
m parameter |
A |
D |
N |
P |
C |
| A |
300(60) |
1.2(0.2) |
25(3) |
0.95(0.16) |
2.0(0.3) |
| D |
1.2(0.2) |
21(5) |
4.0(0.6) |
0.95(0.17) |
1.2(0.2) |
| N |
25(3) |
4.0(0.6) |
47(5) |
2.3(0.4) |
2.6(0.4) |
| P |
0.95(0.16) |
0.95(0.17) |
2.3(0.4) |
1.3(0.7) |
47(16) |
| C |
2.0(0.3) |
1.2(0.2) |
2.6(0.4) |
47(16) |
1.8(0.9) |
|
r parameter |
A |
D |
N |
P |
C |
| A |
0.615(0.014) |
0.195(0.002) |
0.404(0.0018) |
0.136(0.0007) |
0.215(0.0013) |
| D |
0.195(0.002) |
0.112(2.10-4) |
0.1278(2.10-4) |
0.0482(5.10-5) |
0.0602(8.10-5) |
| N |
0.404(0.0018) |
0.1278(2.10-4) |
0.3696(0.0013) |
0.05652(4.10-5) |
0.0845(9.10-5) |
| P |
0.136(7.10-4) |
0.0482(5.10-5) |
0.0565(4.10-5) |
0.00489(1.8.10-6) |
0.00718(9.10-7) |
| C | 0.215(0.0013) | 0.0602(8.10-5) | 0.0845(9.10-5) | 0.00718(9.10-7) | 0.009(6. 10-6) |
The values at row X and column Y give the parameters obtained when fitting the empirical distribution of cumulated contact times between individuals of classes X and Y. The parameter m corresponds to the average of the fitted distribution, while its variance is given by m+m2/r. The numbers in parenthesis are the standard errors as given by the “fitdistr” function.