Table 3. Species used.

Index	Species	# Phenotypes	# Associations
1	Human (Hs)	3,209	3,954
2	Plant (At)	1,137	12,010
3	Worm (Ce)	744	30,519
4	Fly (Dm)	2,503	68,525
5	Zebrafish (Dr)	1,143	4,500
6	E.coli (Ec)	324	72,846
7	Chicken (Gg)	1,188	22,150
8	Mouse (Mm)	4,662	75,199
9	Yeast (Sc)	1,243	73,284

Different species used for inferring gene-phenotype associations in the proposed methods Katz and Catapult, and sizes of the gene-phenotype networks for the species, restricted to orthologs of human genes. The total number of human genes with any kind of phenotype annotation is 12331.