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. Author manuscript; available in PMC: 2013 May 2.
Published in final edited form as: Cell Mol Bioeng. 2011 Mar 8;4(2):281–301. doi: 10.1007/s12195-011-0162-2

APPENDIX 1.

KINETIC EQUATIONS FOR THE METABOLIC REACTIONS

1. Glycolysis I GLC + ATP → G6P + ADP
φGLCG6P=VGLCG6P[Ki,GLCG6PKi,GLCG6P+CG6P][CGLCCATPKm,GLCG6P1+CG6PKi,GLCG6P+CGLCCATPKm,GLCG6P]
2. Glycolysis II G6P ↔ F6P
φG6PF6P=[Vf,G6PF6PCG6PKG6P-Vb,G6PF6PCF6PKF6P1+CG6PKG6P+CF6PKF6P]
3. Glycolysis III F6P + ATP → 2GAP1 + ADP
φF6PGAP1=VF6PGAP1[[CADPCATP]2[μF6PGAP1-]2+[CADPCATP]2][CF6PKm,F6PGAP11+CF6PKm,F6PGAP1]
4. Glycolysis IV GAP1 + Pi + NAD+ + 2ADP → PYR + NADH + 2ATP
φGAP1PYR=VGAP1PYR[[CNADCNADH][νGAP1PYR-]+[CNADCNADH]][[CADPCATP]2[μGAP1PYR-]2+[CADPCATP]2][CGAP1CPiKm,GAP1PYR1+CGAP1CPiKm,GAP1PYR]
5. Pyruvate reduction PYR + NADH ↔ LAC + NAD+
φPYRLAC=[Vf,PYRLACCPYRCNADHKf,PYRLAC-Vb,PYRLACCLACCNADKb,PYRLAC1+CPYRCNADHKf,PYRLAC+CLACCNADKb,PYRLAC]
6. Glycogen synthesis G6P + ATP → GLY + ADP + 2Pi
φG6PGLY=VG6PGLY[[CATPCADP][μG6PGLY+]+[CATPCADP]][CG6PKm,G6PGLY1+CG6PKm,G6PGLY]
7. Glycogen phosphorylation GLY + Pi → G6P
φGLYG6P=VGLYG6P[[CADPCATP]2[μGLYG6P-]2+[CADPCATP]2][CGLYCPiKm,GLYG6P1+CGLYCPiKm,GLYG6P]
8. Pentose phosphate shunt I G6P + 2NADP+ → R5P + 2NADPH + CO2
φG6PR5P=VG6PR5P[CNADP+CNADPH[ηG6PR5P-]+[CNADP+CNADPH]][CG6PKm,G6PR5P1+CG6PKm,G6PR5P]
9. Pentose phosphate shunt II 3R5P → 2F6P + GAP1
φR5PF6P-GAP1=VR5PF6P-GAP1[CR5PKm,R5PF6P-GAP11+CR5PKm,R5PF6P-GAP1]
10. GAP reduction I GAP1 + NADH ↔ G3P1 + NAD+
φGAP1G3P1=[Vf,GAP1G3P1CGAP1CNADHKf,GAP1G3P1-Vb,GAP1G3P1CG3P1CNADKb,GAPG3P11+CGAP1CNADHKf,GAP1G3P1+CG3P1CNADKb,GAP1G3P1]
11. Glyceroneogenesis PYR + 3ATP + NADH → GAP2 + 3ADP + NAD+ + 2Pi
φPYRGAP2=VPYRGAP2[[CNADHCNAD+]νPYRGAP2++[CNADHCNAD+]][CATPCADP[μPYRGAP2+]+[CATPCADP]][CPYRKm,PYRGAP21+CPYRKm,PYRGAP2]
12. GAP reduction II GAP2 + NADH ↔ G3P2 + NAD+
φGAP2G3P2=[Vf,GAP2G3P2CGAP2CNADHKf,GAP2G3P2-Vb,GAP2G3P2CG3P2CNADKb,GAP2G3P21+CGAP2CNADHKf,GAP2G3P2+CG3P2CNADKb,GAP2G3P2]
13. Glycerol phosphorylation GLR + ATP → G3P2 + ADP
φGLRG3P2=VGLRG3P2[[CATPCADP][μGLRG3P2+]+[CATPCADP]][CGLRKm,GLRG3P21+CGLRKm,GLRG3P2]
14. Alanine utilization ALA → PYR
φALAPYR=VALAPYR[CALAKm,ALAPYR1+CALAKm,ALAPYR] Alanine represents the amino acid pool.
15. Alanine formation PYR → ALA
φPYRALA=VPYRALA[CPYRKm,PYRALA1+CPYRKm,PYRALA]
16. Proteolysis Proteins → ALA
φProteolysis=VProteolysis
17. Protein synthesis ALA → Proteins
φProteinSynthesis=VProteinSynthesis
18. Pyruvate oxidation PYR + CoA + NAD+ → ACoA + NADH + CO2
φPYRACoA=VPYRACoA[[CNADCNADH][νPYRACoA-]+[CNADCNADH]][CPYRCCoAKm,PYRACoA1+CACoAKi,PYRACoA+CPYRCCoAKm,PYRACoA]
19. Fatty Acyl CoA synthesis FFA + CoA + 2ATP → FAC + 2 ADP +2 Pi
φFFAFAC=VFFAFAC[[CATPCADP][μFFAFAC+]+[CATPCADP]][CFFACCoAKm,FFAFAC1+CFFACCoAKm,FFAFAC]
20. Fatty acid oxidation FAC + 7CoA + 14NAD+ → 8ACoA + 14NADH
φFACACoA=VFACACoA[[CNAD+CNADH][νFACACoA-]+[CNAD+CNADH]][CFACCCoAKm,FACACoA1+CACoAKi,FACACoA+CFACCCoAKm,FACACoA]
21. TG breakdown by ATGL TG → DG + FFA
φTGDG=VTGDG,ATGL
22. TG breakdown by HSL TG → DG + FFA
φTGDG=VTGDG,HSL
23. DG breakdown by HSL DG → MG + FFA
φDGMG=VDGMG,HSL[CDGKm,DGMG1+CDGKm,DGMG]
24. MG breakdown by HSL MG → GLR + FFA
φMGGLR=VMGGLR,HSL[CMGKm,MGGLR1+CMGKm,MGGLR]
25. MG breakdown by MGL MG → GLR + FFA
φMGGLR=VMGGLR,MGL[CMGKm,MGGLR1+CMGKm,MGGLR]
26. Lipogenesis 8ACoA + 14NADPH + 7ATP → FFA + 8CoA + 14NADP + 7ADP + 7Pi
φACoAFFA=VACoAFFA[[CATPCADP][μACoAFFA+]+[CATPCADP]][[CNADPHCNADP+][ηACoAFFA+]+[CNADPHCNADP+]][CACoAKm,ACoAFFA1+CACoAKm,ACoAFFA]
27. DG synthesis I G3P1 + 2FAC → DG + 2CoA + Pi
φG3P1-FACDG=VG3P1-FACDG[CG3P1CFACKm,G3P1-FACDG1+CG3P1CFACKm,G3P1-FACDG]
28. DG synthesis II G3P2 + 2FAC → DG + 2CoA + Pi
φG3P2-FACDG=VG3P2-FACDG[CG3P2CFACKm,G3P2-FACDG1+CG3P2CFACKm,G3P2-FACDG]
29. TG synthesis DG + FAC → TG + CoA
φDG-FACTG=VDG-FACTG[CDGCFACKm,DG-FACTG1+CDGCFACKm,DG-FACTG]
30. Transacylation I DG + DG → TG + MG
φDG-DGTG-MG=VDG-DGTG-MG[CDGKm,DG-DGTG-MG1+CDGKm,DG-DGTG-MG]
31. Transacylation II MG + MG → DG + GLR
φMG-MGDG-GLR=VMG-MGDG-GLR[CMGKm,MG-MGDG-GLR1+CMGKm,MG-MGDG-GLR]
32. Transacylation III MG + DG → TG + GLR
φMG-DGTG-GLR=VMG-DGTG-GLR[CMGCDGKm,MG-DG-TG-GLR1+CMGCDGKm,MG-DGTG-GLR]
33. TCA cycle ACoA + ADP + Pi + 4NAD+ → 2CO2 + CoA + ATP + 4NADH
φACoACO2=VACoACO2[[CNAD+CNADH][νACoACO2-]+[CNAD+CNADH]][[CADPCATP][μACoACO2-]+[CADPCATP]][CACoACPiKm,ACoACO21+CACoACPiKm,ACoACO2]
34. Oxidative phosphorylation O2 + 6ADP + 6Pi + 2NADH → 2H2O + 6ATP + 2NAD+
φO2H2O=VO2H2O[[CNADHCNAD+][νO2H2O+]+[CNAD+CNADH]][[CADPCATP][μO2H2O-]+[CADPCATP]][CO2CPiKm,O2H2O1+CO2CPiKm,O2H2O]
35. ATP hydrolysis ATP → ADP + Pi
φATPADP=VATPADP[CATPKATPADP1+CPiCADPKi,ATPADP+CATPKm,ATPADP]
36. TG breakdown by LPL TG → GLR + 3FFA
φTGFFA,LPL=VTGFFA,LPL[CTGKm,TGFFA,LPL1+CTGKm,TGFFA,LPL]
This is the only reaction in the blood compartment which is governed by LPL. Rate coefficient is activated by adipose blood flow.