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. Author manuscript; available in PMC: 2014 May 1.
Published in final edited form as: Clin Cancer Res. 2013 Feb 26;19(9):2528–2540. doi: 10.1158/1078-0432.CCR-12-3047

Table IV.

Risk of death associated with normalized methylation level, n=353, number of deaths=227. HPV status was imputed to be negative for samples from sites other than oropharynx.

Hazard Ratio 95% CI P-value
Site: oral cavity
oropharynx 0.723 (0.395, 1.323) 0.292
hypopharynx 0.887 (0.497, 1.584) 0.685
larynx 1.059 (0.699, 1.604) 0.787
other 0.666 (0.337, 1.315) 0.241
multiple 3.847 (1.070, 13.835) 0.039

PNCat: N0 or NX
N1–N3 3.200 (2.246, 4.561) 0.000

Treatment: surgery only
surgery+radiation 0.622 (0.437, 0.886) 0.009
salvage surgery 1.524 (0.969, 2.398) 0.068
unknown 0.677 (0.197, 2.327) 0.535

Gender: female
male 0.990 (0.680, 1.442) 0.958

age 1.023 (1.010, 1.036) 0.000

Smoking: never
pipe or cigar only 0.495 (0.219, 1.122) 0.092
cigarette: <20 pack-yrs 0.796 (0.429, 1.476) 0.469
cigarette: 20–40 pack-yrs 1.036 (0.617, 1.740) 0.894
cigarette: > 40 pack-yrs 1.120 (0.684, 1.836) 0.652
unknown 0.750 (0.218, 2.575) 0.647

Alcohol: < 10 oz/wk
10–32 oz/wk 1.973 (1.326, 2.937) 0.001
>32 oz/wk 1.280 (0.838, 1.955) 0.254
unknown 1.194 (0.634, 2.248) 0.583

P53: wild-type
non-disruptive mutant 1.622 (1.021, 2.578) 0.041
disruptive mutant 1.632 (0.962, 2.770) 0.069

p16 1.008 (1.000, 1.016) 0.045
dcc 1.005 (0.997, 1.013) 0.249
ednrb 1.002 (0.993, 1.011) 0.632
kif 0.997 (0.984, 1.010) 0.642

HPV: no
yes 0.499 (0.212, 1.176) 0.112
unknown 2.312 (0.768, 6.959) 0.136

P53 wild-type
p53 non-disruptive: p16 0.998 (0.986, 1.011) 0.813
p53 disruptive: p16 0.983 (0.968, 0.997) 0.019
p53 non-disruptive: dcc 0.999 (0.986, 1.012) 0.875
p53 disruptive: dcc 1.003 (0.989, 1.018) 0.634
p53n on-disruptive: ednrb 0.987 (0.974, 1.000) 0.053
p53 disruptive: ednrb 0.999 (0.979, 1.019) 0.921
p53 non-disruptive: kif 1.009 (0.991, 1.027) 0.338
p53 disruptive: kif 1.005 (0.984, 1.027) 0.623
p53 non-disruptive: hpv yes 2.300 (0.894, 5.919) 0.084
p53 disruptive: hpv yes 2.196 (0.648, 7.445) 0.207
p53 non-disruptive: hpv unknown 0.738 (0.074, 7.369) 0.796
p53 disruptive: hpv unknown 0.191 (0.021, 1.728) 0.141