Table 3.
Summary of the classification of the Hevea brasiliensis AP2/ERF superfamily compared with several species: Arabidopsis thaliana[27], Populus trichocarpa [28], Vitis vinifera[45], Solanum lycopersicum [56], Gossypium hirsutum[48], Triticum aestivum[26]
|
Family |
Conserved domain |
Number of members in each AP2/ERF gene family from different species |
|||||||
|---|---|---|---|---|---|---|---|---|---|
| |
|
|
Genome |
Transcriptome |
|||||
| Arabidopsis | Populus | Vitis | Solanum | Gossypium | Triticum | Hevea | |||
| AP2 |
Double AP2/ERF domain |
Total |
18 |
26 |
20 |
16 |
4 |
9 |
25 |
| |
|
Two full-length domains |
14 |
26 |
20 |
11 |
4 |
9 |
9 |
| |
|
One full-length domain plus one partial domain |
- |
- |
- |
- |
- |
- |
4 |
| |
|
Two partial domains |
|
|
|
|
|
- |
2 |
| |
One AP2/ERF domain |
One full-length domain |
4 |
- |
- |
5 |
- |
- |
7 |
| |
|
One partial domain |
- |
- |
- |
- |
- |
- |
3 |
| ERF |
Single AP2/ERF domain |
Total |
122 |
169 |
122 |
93 |
148 |
104 |
141 |
| |
|
Full-length domain |
122 |
169 |
122 |
85 |
148 |
104 |
115 |
| |
|
Partial domain |
- |
- |
- |
8 |
- |
- |
26 |
| RAV |
Single AP2/ERF domain plus one B3 domain |
|
6 |
6 |
6 |
3 |
4 |
3 |
4 |
| SOLOIST |
Short single AP2/ERF domain |
|
1 |
1 |
1 |
- |
- |
1 |
3 |
| TOTAL NUMBER | 147 | 202 | 149 | 112 | 156 | 117 | 173 | ||
These AP2/ERF sequences were obtained either after genome sequencing or transcriptome sequencing.