Table 1.
Results of the genome wide association of sleep parameters and SNPs from the DGRP
| Trait | Trait mean SNPs* | % Low frequency Alleles** | TraitCVESNPs* | % Low frequency Alleles** | Overlapping SNPs (%) | Trait mean genes | TraitCVEgenes | Overlapping genes |
|---|---|---|---|---|---|---|---|---|
| Night sleep |
160 (120) |
87.5 |
1,552 (1,175) |
82.0 |
95.6 |
53 |
456 |
52 |
| Day sleep |
0 (0) |
0 |
71 (51) |
76.0 |
0.0 |
0 |
23 |
0 |
| Night bout no. |
0 (0) |
0 |
3 (3) |
33.3 |
0.0 |
0 |
0 |
0 |
| Day bout no. |
3 (3) |
0 |
340 (198) |
82.1 |
0.0 |
2 |
103 |
0 |
| Night average bout length |
16 (16) |
68.8 |
1 (1) |
100.0 |
0.0 |
6 |
1 |
0 |
| Day average bout length |
2,082 (1,174) |
76.7 |
5 (3) |
100.0 |
0.1 |
551 |
3 |
2 |
| Waking activity | 264 (214) | 89.4 | 4,083 (2,727) | 80.7 | 10.6 | 87 | 970 | 45 |
*Numbers of SNPs listed have FDR ≤ 0.01; numbers of SNPs accounting for inversions and local LD blocks are listed in parentheses. See text for additional detail.
** Low frequency is defined here as 0.024 ≤ minor allele frequency ≤ 0.05.