Table 1.
Summary of MICAL sequences as retrieved from databanks. The identification was done by taking into account annotations and direct sequence comparisons. When several isoforms for each one of the predicted proteins exist on the basis of alternative splicing and comparison of cDNA and DNA clones deposited in databanks, the putative full-length protein was selected following sequence comparisons within and among the MICAL1–3 classes using BLAST and ClustalW2 or Clustal Omega [61]. The accession codes of isoforms are given in a few instances.
Protein | Organism | Chromosome location | Nucleotide | Protein | Length (residues) | Gene ID | UniPro/SwissProt | Remarks |
---|---|---|---|---|---|---|---|---|
MICAL1 | human | 6q21 | NM_022765 | NP_073602 | 1067 | 64780 | Q8TDZ2 | Figure 4 |
MICAL2 | human | 11p15 | NM_014632 | NP_055447 | 1124 | 9645 | O94851 | Figure 4 |
MICAL3 | human | 22q11.21 | NM_015241 | NP_056056 | 2002 | 57553 | Q7RTP6 | Figure 4 |
MICAL1 | mouse | 10 B1-B2 | NM_138315 | NP_612188 | 1048 | 171580 | Q8VDP3 | Figure 4 |
MICAL2 | mouse | 7E3 | NM_001193305 | NP_001180234 | 1102 | 320878 | 8QBML1 | isoform A; Figure 4 |
MICAL3 | mouse | 6F1 | NM_001270475 | NP_001257404 | 1993 | 194401 | Q8CJ19 | isoform 1; Figure 4 |
MICAL1 | rat | 20q12 | NM_001106397 | NP_001099867 | 1047 | 294520 | D3ZBP4 | Figure 4 |
MICAL2 | rat | 1q33 | EDM_17817 | 1103 | 365352 | D4A1F2-2 | Figure 4 | |
MICAL3 | rat | 4q42 | NM_001191085 | NP_001178014 | 1997 | 362427 | - | Figure 4 |
MICAL1 | guinea pig | - | XM_003466042 | XP_003466090 | 1058 | 100715118 | H0V032 | Figure4 |
MICAL2 | guinea pig | - | XM_003465749 | XP_003465749 | 1105 | 100735168 | - | Figure 4 |
MICAL3 | guinea pig | - | XM_003461762 | XP_003461810 | 2005 | 100726239 | Figure 4 | |
MICAL1 | macaque | 4 | XM_002803949 | XP_002803995 | 1065 | 698737 | Figure 4 | |
MICAL2 | macaque | 14 | EEH23095 | 1124 | 701439 | Figure 4 | ||
MICAL3 | macaque | 10 | XM_001103660 | XP_001103660 | 2001 | 710292 | Figure 4 | |
MICAL1 | D. rerio | 23 | XM_003201226 | XP_003201274 | 1214 | 568573 | E7F9T0 | Predicted as MICAL3, Figure 4 |
MICAL2 | D. rerio | 25 | JX291155 | AFS28884 | 1120 | 569564 | Figure 4 | |
MICAL3 | D. rerio | 18 | 1994 | 567456 | F1QH17.2 | Authentic according to UniPro; Figure 4 | ||
MICAL | drosophila | 3R | AF520715 | AAM55244 | 4723 | 41225 | Q86BA1 | long isoform differing from others for interdomain regions; Figure 4 |