Table 1.
Distribution and diversity index of 946 single nucleotide polymorphism (SNP) markers in a set of 150 T. durum accessions.
| Chromosome | No. of SNP Markers | No. of Polymorphic Markers | Gene Diversity | PIC |
|---|---|---|---|---|
| A Genome | ||||
| 1A | 114 | 75 | 0.2319 | 0.1905 |
| 2A | 96 | 65 | 0.2180 | 0.1840 |
| 3A | 98 | 67 | 0.2036 | 0.1697 |
| 4A | 124 | 86 | 0.1899 * | 0.1576 * |
| 5A | 85 | 59 | 0.2179 | 0.1798 |
| 6A | 125 | 78 | 0.2526 * | 0.2072 * |
| 7A | 135 | 88 | 0.2249 | 0.1884 |
|
| ||||
| Subtotal/Mean | 767 | 516 | 0.2193 | 0.1819 |
|
| ||||
| B Genome | ||||
| 1B | 99 | 76 | 0.2695 * | 0.2225 * |
| 2B | 87 | 64 | 0.2553 | 0.2097 |
| 3B | 67 | 49 | 0.2180 * | 0.1832 |
| 4B | 75 | 46 | 0.2200 * | 0.1804 * |
| 5B | 76 | 49 | 0.2120 * | 0.1747 * |
| 6B | 105 | 83 | 0.2211 * | 0.1842 |
| 7B | 101 | 70 | 0.2404 | 0.1982 |
|
| ||||
| Subtotal/Mean | 599 | 430 | 0.2384 | 0.1970 |
|
| ||||
| Hemoeologous | ||||
| 1 | 213 | 151 | 0.2508 * | 0.2066 * |
| 2 | 183 | 129 | 0.2365 | 0.1967 |
| 3 | 165 | 116 | 0.2097 * | 0.1754 * |
| 4 | 199 | 132 | 0.2004 * | 0.1656 * |
| 5 | 161 | 108 | 0.2153 * | 0.1775 * |
| 6 | 230 | 161 | 0.2364 | 0.1953 |
| 7 | 236 | 158 | 0.2318 | 0.1927 |
|
| ||||
| Total/Grand mean | 1366 | 946 | 0.2280 | 0.1888 |
*
Means outside of the 95% bootstrap confidence interval of the genome mean.