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. 2013 Mar 28;14(4):7061–7088. doi: 10.3390/ijms14047061

Table 5.

ESTs and the plausible functions in the homologous ESTs outlier loci between landrace and cultivar.

SNP marker and the EST Gene function and the homologous EST
Code SNP Marker Accession No. Map position (Bin) Function Accession No. Identity (%) E-value
Outlier 1 AY244508_5_B_Y_26 AY244508 5B G1777 MADS-box transcriptional factor (AP1) gene, T. monococcum AY244508.1
Outlier 2 BE405518_1_A_95 BE405518 1AS3-0.86–1.00 Alternative splicing regulator (RSZ38), T. aestivum DQ019628.1 93% 0
Outlier 3 BE405518_1_A_Y_106 BE405518 1AS3-0.86–1.00 Alternative splicing regulator (RSZ38), T. aestivum DQ019628.1 93% 0
Outlier 4 BE442666_4_A_269 BE442666 4AL13-0.59–0.66 Lipoxygenase 3 (LOX3), T. aestivum HQ913602.1 99% 0
Outlier 5 BE442666_4_B_Y_327 BE442666 4BS8-0.57–0.81 Lipoxygenase 3 (LOX3), T. aestivum HQ913602.1 99% 0
Outlier 6 BE404341_5_B_Y_124 BE404341 5B Phytochelatin synthetase, T. aestivum AY442329.1 98% 0
Outlier 7 BE406148_7_B_Y_647 BE406148 7BL7-0.63–0.78 Cyclophilin B-B gene, T. aestivum EU627095.1 100% 9 × 10−101
Outlier 8 BE445506_7_B_Y_355 BE445506 7BL10-0.78–1.00 Unknown
Outlier 9 BE405834_1_A_N_641 BE405834 1AS3-0.86–1.00 Soluble inorganic pyrophosphatase-like, B. distachyon XM_003568957.1 91% 0
Outlier 10 BE405834_1_B_Y_216 BE405834 1BL1-0.47–0.69 Soluble inorganic pyrophosphatase-like, B. distachyon XM_003568957.1 91% 0
Outlier 11 BE446240_1_B_131 BE446240 1BL1-0.47–0.69 Rab GDP dissociation inhibitor, B. distachyon XM_003568390.1 93% 0
Outlier 12 BE403177_2_B_409 BE403177 2B F-box protein 7-like, B. distachyon XM_003579715.1 90% 3 × 10−136
Outlier 13 BE404332_2_B_29 BE404332 C-2BS4-0.75 * Ribosomal protein S12 (rps12), H. vulgare AF067732.1 94% 0
Outlier 14 BE444144_2_B_92 BE444144 2BS Unknown
Outlier 15 BE445278_2_B_143 BE445278 2B RuvB-like 2-like, B. distachyon XM_003562775.1 92% 0
Outlier 16 BE445278_2_B_243 BE445278 2B RuvB-like 3-like, B. distachyon XM_003562775.1 92% 0
Outlier 17 BE445242_2_A_362 BE445242 C-2AS5-0.78 Unknown
Outlier 18 BE444579_3_B_Y_375 BE444579 3B Unknown
Outlier 19 BE444864_3_B_373 BE444864 3BL7-0.63–1.00 C2 domain-containing protein C31G5.15-like, B. distachyon XR_138068.1 91% 0
Outlier 20 BE443187_5_A_511 BE443187 5AL12-0.35–0.57 65-kDa microtubule-associated protein 7-like, B. distachyon XM_003578156.1 88% 0
Outlier 21 CD373602_5_B_Y_310 CD373602 5BL16-0.79–1.00 Unknown
Outlier 22 BE444256_6_A_N_1118 BE444256 C-6AL4-0.55 Alcohol dehydrogenase-like 6-like, B. distachyon XM_003569903.1 93% 0
Outlier 23 CD452643_6_B_111 CD452643 6BL3 Alcohol dehydrogenase-like 6-like, B. distachyon XM_003569903.1 92% 1 × 10−117
Outlier 24 CD452643_6_B_Y_113 CD452643 6BL3 Alcohol dehydrogenase-like 6-like, B. distachyon XM_003569903.1 92% 1 × 10−117
Outlier 25 BE446380_7_A_577 BE446380 7AS8-0.45–0.59 Putative phospholipid-transporting ATPase 9-like, B. distachyon XM_003563827.1 91% 0
Outlier 26 BE403950_6_B_Y_325 BE403950 6BL5-0.40–1.00 ABC transporter F family member 3-like, B. distachyon XM_003570443.1 93% 0
Outlier 27 BE517729_1_A_116 BE517729 1AL3-0.61–1.00 Putative prolyl aminopeptidase 1 (PAP1), T. durum × Secalecereale JN808306.2 97% 0
Outlier 28 BE517729_1_A_Y_117 BE517729 1AL3-0.61–1.00 Putative prolyl aminopeptidase 1 (PAP1), T. durum × Secalecereale JN808306.2 97% 0
Outlier 29 BE517831_2_B_70 BE517831 C-2BL2-0.36 Phosphoinositide-specific phospholipase C1, T. aestivum HM754654.1 95% 0
Outlier 30 BF200531_1_A_N_573 BF200531 1AS3-0.86–1.00 Protein notum homolog, B. distachyon XM_003566643.1 94% 4 × 10−169
Outlier 31 BF474493_6_A_N_40 BF474493 C-6AL4-0.55 Pescadillo homolog, B. distachyon XM_003560899.1 91% 0
Outlier 32 BF474139_1_A_144 BF474139 1AL3-0.61–1.00 6 phosphofructo kinase 3-like, B. distachyon XM_003568020.1 95% 6 × 10−157
Outlier 33 BF201102_5_B_444 BF201102 5BS6-0.81–1.00 Methionine synthase 1 enzyme (ms1 gene), Hordeum vulgare AM039904.1 93% 2 × 10−168
Outlier 34 BF201102_5_B_Y_373 BF201102 5BS6-0.81–1.00 Methionine synthase 1 enzyme (ms1 gene), Hordeum vulgare AM039904.1 93% 2 × 10−168
Outlier 35 CD453605_6_B_427 CD453605 6B Putative nitric oxide synthase-like, B. distachyon XM_003570728.1 89% 2 × 10−179
Outlier 36 BF474379_7_A_83 BF474379 7AL16-0.86–0.90 Protein N-terminal asparagine amidohydrolase-like, B. distachyon XM_003563571.1 90% 0
Outlier 37 BF474379_7_A_Y_253 BF474379 7AL16-0.86–0.90 Protein N-terminal asparagine amidohydrolase-like, B. distachyon XM_003563571.1 90% 0
Outlier 38 BE494527_1_B_77 BE494527 1BL2-0.0.69–0.85 Phosphoethanolamine methyltransferase, T. aestivum AY065971.1 96% 3 × 10−86
Outlier 39 BE494527_1_B_Y_438 BE494527 1BL2-0.0.69–0.85 Phosphoethanolamine methyltransferase, T. aestivum AY065971.1 96% 3 × 10−86
Outlier 40 BE494765_4_B_Y_426 BE494765 4BL5-0.86–1.00 Unknown
Outlier 41 BE636872_6_A_119 BE636872 6A Unknown
Outlier 42 BE495277_5_B_336 BE495277 C-5BL14-0.75 * UPF0664 stress-induced protein C29B12.11c-like, B. distachyon XM_003578371.1 91% 2 × 10−137
Outlier 43 BE493868_7_A_Y_93 BE493868 7AS5-0.59–0.89 Probable protein phosphatase 2C 54-like, B. distachyon XM_003564166.1 91% 0
Outlier 44 BE494482_7_B_Y_29 BE494482 7B Zuxin response factor 21 (ARF21) gene, Zea mays HM004536.1 92% 3 × 10−67
Outlier 45 CD491758_6_A_Y_81 CD491758 6A Calcium-dependent protein kinase-like (CPK10), T. aestivum EU181189.1 92% 0
Outlier 46 BQ159615_6_B_Y_336 BQ159615 6B Leucine-rich repeat protein (LRR2), T. aestivum EF555120.1 98% 0
Outlier 47 BF291774_6_B_181 BF291774 6BSc Putative vacuolar cation/proton exchanger 4-like, B. distachyon XM_003570864.1 83% 0
Outlier 48 BF292264_7_A_712 BF292264 7AS1-0.89–1.00 Unknown
Outlier 49 BF292193_7_B_N_78 BF292193 7BL7-0.63–0.78 Cytochrome b5 (cb5-1 gene), Oryza sativa AJ429043.1 84% 8 × 10−103
Outlier 50 BF291774_6_B_519 BF291774 6BSc Putative vacuolar cation/proton exchanger 4-like, B. distachyon XM_003570864.1 83% 0
Outlier 51 BG263233_1_B_825 BG263233 1BL2-0.0.69–0.85 Flap endonuclease 1-A-like, B. distachyon XM_003567949.1 91% 0
Outlier 52 BG605368_2_A_156 BG605368 C-2AL1-0.85 Exopolygalacturonase-like, B. distachyon XM_003571584.1 86% 4 × 10−136
Outlier 53 BG605368_2_A_Y_310 BG605368 C-2AL1-0.85 Exopolygalacturonase-like, B. distachyon XM_003571584.1 86% 4 × 10−136
Outlier 54 BG263521_2_B_Y_261 BG263521 C-2BS1-0.53 Mitogen activated protein kinase (MEK1), O, sativa AF080436.1 83% 4 × 10−141
Outlier 55 BF203070_3_B_Y_52 BF203070 3BS9-0.57–0.78 Unknown
Outlier 56 BE637808_4_A_Y_332 BE637808 4A DEAD-box ATP-dependent RNA helicase 16-like, B. distachyon XM_003559423.1 90% 4 × 10−165
Outlier 57 BF482950_4_A_Y_272 BF482950 4A Lariat debranching enzyme-like, B. distachyon XM_003559432.1 90% 7 × 10−117
Outlier 58 BF483551_4_A_N_203 BF483551 4AS3-0.76–1.00 Unknown
Outlier 59 BE497820_5_A_Y_664 BE497820 C-5AL10-0.57 * Probable thylakoidal processing peptidase 2, chloroplastic-like, B. distachyon XM_003578166.1 89% 0
Outlier 60 BE498662_7_A_Y_513 BE498662 7AS8-0.45–0.59 Unknown
Outlier 61 BF482403_7_A_126 BF482403 7AL21-0.74–0.86 Unknown
Outlier 62 BQ169669_7_A_Y_378 BQ169669 7AL18 Unknown
Outlier 63 BE499248_7_B_Y_63 BE499248 7BS1-0.27–1.00 Caffeoyl-CoA O-methyltransferase 2, B. distachyon XM_003564219.1 95% 6 × 10−153
Outlier 64 BF485380_7_B_Y_479 BF485380 7B Unknown
Outlier 65 BM140362_1_B_432 BM140362 1BL1-0.47–0.69 Glyoxysomal processing protease, glyoxysomal-like, B. distachyon XM_003568135.1 89% 0
Outlier 66 BG604678_4_A_Y_256 BG604678 4AL13-0.59–0.66 Phytanoyl-CoA dioxygenase domain-containing protein 1-like, B. distachyon XM_003560712.1 92% 0
Outlier 67 CD453913_7_A_105 CD453913 7A Phosphoserine phosphatase, chloroplastic-like, B. distachyon XM_003577403.1 89% 2 × 10−179
Outlier 68 BG262421_6_A_87 BG262421 6AS1-0.35–0.65 Purple acid phosphatase 18-like, B. distachyon XM_003562305.1 91% 0
Outlier 69 BG262287_7_B_Y_175 BG262287 7B Vacuolar proton-ATPase subunit A, T. aestivum DQ432014.1 99% 0
Outlier 70 BE490763_2_A_1462 BE490763 2AL1-0.85–1.00 Endoplasmic reticulum metallopeptidase 1-like, B. distachyon XM_003580100.1 88% 0
Outlier 71 BE471213_6_A_N_28 BE471213 6AL8-0.90–1.00 Metal tolerance protein C2-like, B. distachyon XM_003570688.1 92% 6 × 10−178
Outlier 72 BE591172_4_B_Y_148 BE591172 4BL5-0.86–1.00 Phytoenedesaturase (PDS), T. aestivum FJ517553.1 98% 0
Outlier 73 BE591974_5_A_1534 BE591974 5AS1-0.40–0.75 Unknown
Outlier 74 BE591290_1_B_Y_289 BE591290 1BL2-0.0.69–0.85 B73 WTF1 gene, Zea mays cultivar FJ264201.1 82% 2 × 10−134
Outlier 75 BE591002_7_A_244 BE591002 7AL17-0.71–0.74 Probable alanyl-t RNA synthetase, chloroplastic-like, transcript variant 2, B. distachyon XM_003563964.1 85% 2 × 10−108
Outlier 76 BE591777_6_A_Y_394 BE591777 6AL8-0.90–1.00 PAP-specific phosphatase HAL2-like, B. distachyon XM_003570307.1 89% 1 × 10−128
Outlier 77 BE497494_2_A_Y_475 BE497494 2AS5-0.78–1.00 GLU gene for ferredoxin-dependent glutamate synthase precursor, O. sativa AB061357.1 96% 0
Outlier 78 BE497224_4_A_Y_41 BE497224 4AS1-0.20–0.63 Unknown
Outlier 79 BE605194_7_B_Y_583 BE605194 7BL10-0.78–1.00 Serine/threonine-protein kinase At5g01020-like, B. distachyon XM_003563310.1 92% 2 × 10−131
Outlier 80 BG275030_2_A_96 BG275030 2AS5-0.78–1.00 Symplekin-like, B. distachyon XM_003559695.1 91% 4 × 10−144
Outlier 81 BG275030_2_A_Y_103 BG275030 2AS5-0.78–1.00 Symplekin-like, B. distachyon XM_003559695.1 91% 4 × 10−144
Outlier 82 BF475120_6_B_Y_75 BF475120 6BL5-0.40–1.00 Unknown
Outlier 83 BG313707_5_A_Y_547 BG313707 5AS1-0.40–0.75 2 oxoglutarate/malate translocator, chloroplastic-like, B. distachyon XM_003575906.1 93% 3 × 10−160
Outlier 84 BG314532_2_A_Y_446 BG314532 2AS5-0.78–1.00 Unknown
Outlier 85 BQ168780_5_B_995 BQ168780 C-5BL14–0.75 * Actin-related protein 2/3 complex subunit 5-like, B. distachyon XM_003577407.1 92% 1 × 10−145
Outlier 86 BG314551_3_A_Y_162 BG314551 3AS4-0.45–1.00 66 kDa stress protein-like, B. distachyon XM_003567837.1 87% 4 × 10−176
Outlier 87 BQ168329_2_A_Y_198 BQ168329 2A Protoporphyrin IX Mg-chelatase subunit precursor (Xantha-f) gene, H. vulgare U26916.1 97% 0
Outlier 88 BE426222_3_A_68 BE426222 C-3AS2-0.23 Topless-related protein 2-like, transcript variant 1, B. distachyon XM_003566383.1 91% 0
Outlier 89 BE489326_3_B_Y_300 BE489326 C-3BL2-0.22 CTD-phosphatase-like protein, Zea mays NM_001155943.1 80% 1 × 10−115
Outlier 90 BE425301_4_A_Y_160 BE425301 4AS4-0.63–0.76 40S ribosomal protein gene, T. aestivum AF479043.1 99 5 × 10−175
Outlier 91 BE426413_6_B_286 BE426413 C-6BL5-0.40 * Adenosine kinase 2-like, B. distachyon XM_003575347.1 94% 0
Outlier 92 BJ291318_5_B_Y_120 BJ291318 5B 60S ribosomal protein L23a-like, B. distachyon XM_003557882.1 87% 2 × 10−179