Table 3. Families of transposable elements in the Octadecabacter strains.
O. arcticus 238 | O. antarcticus 307 | |||||
Family | Genesa | Pseudo-genes | Totalb | Genesa | Pseudo-genes | Totalb |
IS3c | 177 | 30 | 207 | 137 | 49 | 186 |
IS4 | 0 | 0 | 0 | 1 | 1 | 2 |
IS5d | 44 | 19 | 63 | 34 | 8 | 42 |
IS6 | 25 | 4 | 29 | 12 | 3 | 15 |
IS10 | 7 | 8 | 15 | 0 | 0 | 0 |
IS21 | 11 | 0 | 11 | 13 | 4 | 17 |
IS30 | 45 | 17 | 62 | 8 | 0 | 8 |
IS66 | 66 | 15 | 81 | 2 | 1 | 3 |
IS91 | 22 | 5 | 27 | 12 | 0 | 12 |
IS110 | 17 | 4 | 21 | 33 | 39 | 72 |
IS200/IS605 | 38 | 2 | 40 | 14 | 0 | 14 |
IS204/IS1001/IS1096/IS1165 | 0 | 2 | 2 | 0 | 0 | 0 |
IS256 | 72 | 21 | 93 | 9 | 3 | 12 |
IS481 | 33 | 3 | 36 | 1 | 16 | 17 |
IS630 | 73 | 10 | 83 | 2 | 3 | 5 |
IS116/IS110/IS902 | 1 | 0 | 1 | 0 | 0 | 0 |
IS1182 | 0 | 0 | 0 | 1 | 14 | 15 |
IS1380 | 1 | 0 | 1 | 2 | 0 | 2 |
IS1595 | 33 | 1 | 34 | 20 | 3 | 23 |
ISAs1 | 28 | 2 | 30 | 0 | 0 | 0 |
ISL3 | 29 | 10 | 39 | 0 | 0 | 0 |
P4-integrase | 1 | 0 | 1 | 0 | 0 | 0 |
ISNCY | 1 | 2 | 3 | 0 | 0 | 0 |
unclassified | 188 | 108 | 296 | 60 | 121 | 181 |
Total TEs | 912 | 263 | 1175 | 361 | 265 | 626 |