Table 1.
SNP ID | F-SNP | Amino acid change with position | |||
---|---|---|---|---|---|
SNP type | Allele change | FS score | SIFT | PolyPhen | |
rs1052576 | Non-synonymous | Ta/Gb | 0.774 | Qc(221)Rd | Qc(221)Rd |
rs1052574 | Non-synonymous | Ta/Ce | 0.789 | Lf(197)Pg | Lf(197)Pg |
rs2308939 | Non-synonymous | Ce/Ah | 0.977 | Rd(192)Si | Rd(192)Si |
rs2308949 | Non-synonymous | Gb/Ah | 0.136 | Gj(176)Rd | Gj(176)Rd |
rs2308950 | Non-synonymous | Gb/Ah | 0.318 | Rd(173)Hk | Rd(173)Hk |
rs1820204 | Non-synonymous | Ta/Ah | 0.888 | Fl(136)Lf | Fl(136)Lf |
rs2020897 | Non-synonymous | Gb/Ce | 0.916 | Em(114)Dn | Em(114)Dn |
rs2308938 | Non-synonymous | Ce/Ta | 0.533 | Lf(106)Fl | Lf(106)Fl |
rs2308941 | Non-synonymous | Ce/Ta | 0.749 | To(102)Ip | To(102)Ip |
rs9282624 | Non-synonymous | Ce/Gb | 0.919 | Ip(185)Mq | Ip(185)Mq |
rs4646008 | Non-synonymous | Ce/Ta | 0.774 | Si(99)Lf | Si(99)Lf |
Fs Functional significance
aThymine
bGuanine
cGlutamine
dArginine
eCytosine
fLeucine
gProline
hAdenine
iSerine
jGlycine
kHistidine
lPhenylalanine
mGlutamate
nAspartate
oThreonine
pIsoleucine
qMethionine